Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30127
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 107 5e-24
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 107 5e-24
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 107 9e-24
At3g27530.1 68416.m03441 vesicle tethering family protein contai... 29 3.6
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 29 3.6
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 29 3.6
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 28 4.8
At2g42800.1 68415.m05299 leucine-rich repeat family protein cont... 28 4.8
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 28 4.8
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /... 28 6.3
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 28 6.3
At5g02800.1 68418.m00222 protein kinase family protein contains ... 27 8.4
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 107 bits (258), Expect = 5e-24
Identities = 48/81 (59%), Positives = 61/81 (75%)
Frame = +2
Query: 257 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 436
T SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M G
Sbjct: 75 TALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDG 134
Query: 437 VTVVNSPKQKDELIIEGNSLE 499
VT+V S K KDE++++GN +E
Sbjct: 135 VTIVRSEKVKDEIVLDGNDIE 155
Score = 64.5 bits (150), Expect = 6e-11
Identities = 27/73 (36%), Positives = 51/73 (69%), Gaps = 5/73 (6%)
Frame = +3
Query: 51 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 215
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 216 EKWFGSKKELAAV 254
+ WFG++K A++
Sbjct: 61 DSWFGTRKTSASI 73
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1
Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 615
S ALI Q VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 160 SCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 107 bits (258), Expect = 5e-24
Identities = 48/81 (59%), Positives = 61/81 (75%)
Frame = +2
Query: 257 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 436
T SHV+N+I GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M G
Sbjct: 75 TALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDG 134
Query: 437 VTVVNSPKQKDELIIEGNSLE 499
VT+V S K KDE++++GN +E
Sbjct: 135 VTIVRSEKVKDEIVLDGNDIE 155
Score = 64.5 bits (150), Expect = 6e-11
Identities = 27/73 (36%), Positives = 51/73 (69%), Gaps = 5/73 (6%)
Frame = +3
Query: 51 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 215
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 216 EKWFGSKKELAAV 254
+ WFG++K A++
Sbjct: 61 DSWFGTRKTSASI 73
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1
Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 615
S ALI Q VK KDIRKFLDG+YVSEK+ +V ++
Sbjct: 160 SCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 107 bits (256), Expect = 9e-24
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = +2
Query: 257 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 436
T SHV+N+I GVT+GF Y+MR VYAHFPIN N IEIRNFLGEK +R+V+M G
Sbjct: 75 TALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDG 134
Query: 437 VTVVNSPKQKDELIIEGNSLE 499
V +V S K KDE+I+EGN +E
Sbjct: 135 VKIVRSEKVKDEIILEGNDIE 155
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 5/73 (6%)
Frame = +3
Query: 51 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 215
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 216 EKWFGSKKELAAV 254
+ WFGS+K A++
Sbjct: 61 DSWFGSRKTSASI 73
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 615
S ALI Q VK KDIRKFLDG+YVSEK + +++
Sbjct: 160 SCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194
>At3g27530.1 68416.m03441 vesicle tethering family protein contains
Pfam PF04869: Uso1 / p115 like vesicle tethering
protein, head region and PF04871: Uso1 / p115 like
vesicle tethering protein, C terminal region
Length = 914
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 262 DCPTAASSFLDPNHFSTF 209
DCPTA FLD H TF
Sbjct: 536 DCPTAVQCFLDSRHHLTF 553
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 266 NRLSHGGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 156
N + GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 182 NNFNLGGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/64 (21%), Positives = 32/64 (50%)
Frame = +3
Query: 24 GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 203
G + + K +++K+ DG VHV ++ + ++ +LK+N + +++ + P
Sbjct: 188 GIAIPHHKDEKDENKTKELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPT 247
Query: 204 LLKV 215
L V
Sbjct: 248 LFNV 251
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 28.3 bits (60), Expect = 4.8
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Frame = +2
Query: 32 CQTKPKHEANCSKSESQNPRRAYGPC------EIASGDS*RAPRSSQKELQTLGC*HSHG 193
C KHE ++ QN R A G C E GDS + ++ T G H
Sbjct: 112 CGAYKKHEEEDEETRRQN-REARGVCRAFQRGECTRGDSCKFSHDEKRAANT-GWGHEED 169
Query: 194 KPS------SPEG*EMVR-IQKGACRRGTVCSHVENMIKGVTKGFQYK 316
+ S + EG + R Q+G C RG C + + T G+ ++
Sbjct: 170 RSSKWDHDKNREGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHE 217
>At2g42800.1 68415.m05299 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; and grail
Length = 462
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 266 NRLSHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNC 126
+ LSH +L FGS P + + + A+ S +F +PF S FNC
Sbjct: 80 DHLSHVSRLDFGSAPNPSCKSS----ASFPSSIFTLPFLQSVFFFNC 122
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 233 QKGACRRGTVCSHVENMIKGVTKGFQYKMR 322
+KGACRRG +C + + + QY+ R
Sbjct: 311 RKGACRRGDMCEYAHGVFECWLHPAQYRTR 340
>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
cytokinin oxidase family protein similar to cytokinin
oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
Length = 501
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -1
Query: 486 PSMISS-SFCFGELTTVTPGAI 424
PS+IS+ S FG +TTVTPG +
Sbjct: 39 PSIISAASHDFGNITTVTPGGV 60
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/68 (17%), Positives = 34/68 (50%)
Frame = +3
Query: 3 VSKRSFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVD 182
+ R F K+ + + + +++++ DG T+H K + + ++ +LK+ + ++
Sbjct: 187 IESRGFHIGGNKKDEDEAEEIETKEIELEDGETIHAKDKSLPLQTLIDILKQQTGNDNIE 246
Query: 183 IRMVNPRL 206
+ + P L
Sbjct: 247 VGKIRPSL 254
>At5g02800.1 68418.m00222 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 378
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = -1
Query: 543 DCSRLLDESSRAETSSKELPS-----MISSSFCFGELTTVT 436
DCS E SRA++S E S +++ +F F EL T T
Sbjct: 30 DCSVSTSEKSRAKSSLSESKSKGSDHIVAQTFTFSELATAT 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,477
Number of Sequences: 28952
Number of extensions: 300128
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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