Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30125
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   146   5e-36
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             146   7e-36
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             145   1e-35
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   3.8  
At5g09280.1 68418.m01075 pectate lyase family protein similar to...    27   6.6  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   8.7  
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr...    27   8.7  

>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  146 bits (355), Expect = 5e-36
 Identities = 67/87 (77%), Positives = 77/87 (88%)
 Frame = +3

Query: 3   QAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 182
           QAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ S
Sbjct: 101 QAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSS 160

Query: 183 GDPCNDYVNTATRHVLLRQGVLGIRSK 263
           G P  +Y+++A RHVLLRQGVLGI+ K
Sbjct: 161 GQPTKEYIDSAVRHVLLRQGVLGIKVK 187



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +2

Query: 254 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 367
           +VK+ML WD +G +GPK P PD +++  PK+E     P
Sbjct: 185 KVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  146 bits (354), Expect = 7e-36
 Identities = 67/87 (77%), Positives = 76/87 (87%)
 Frame = +3

Query: 3   QAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 182
           QAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ S
Sbjct: 101 QAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSS 160

Query: 183 GDPCNDYVNTATRHVLLRQGVLGIRSK 263
           G P  +Y++ A RHVLLRQGVLGI+ K
Sbjct: 161 GQPTKEYIDAAVRHVLLRQGVLGIKVK 187



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 20/38 (52%), Positives = 26/38 (68%)
 Frame = +2

Query: 254 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 367
           +VKIML WD  GK+GPK P PD +++  PKD+ V   P
Sbjct: 185 KVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222


>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  145 bits (352), Expect = 1e-35
 Identities = 66/87 (75%), Positives = 76/87 (87%)
 Frame = +3

Query: 3   QAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 182
           QAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ S
Sbjct: 101 QAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSS 160

Query: 183 GDPCNDYVNTATRHVLLRQGVLGIRSK 263
           G P  +Y++ A RHVLLRQGVLG++ K
Sbjct: 161 GQPTKEYIDAAVRHVLLRQGVLGLKVK 187



 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +2

Query: 254 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 379
           +VKIML WD +GK GP  P PD +++  PK++ V + P   V
Sbjct: 185 KVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVV 226


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 90  GARGCEVVVSGKLRGQRAKSMKFVDG 167
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


>At5g09280.1 68418.m01075 pectate lyase family protein similar to
           major pollen allergen Cup a 1 SP:Q9SCG9 from [Cupressus
           arizonica]
          Length = 297

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 290 CLAGPTAT*F*PDS*YSLPEKHMSGSSVDVIIARVSRVDHESIY 159
           C A P ++   PDS   +   HM G ++ ++ A+   +DH ++Y
Sbjct: 97  CKAHPPSSVMGPDS-KIIQLGHMDGDAIRLVTAKKVWIDHNTLY 139


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 305 KPQPDHILVTEPKDEPVPLEPTSEV 379
           KPQP+ +   EP+ EP P EP  E+
Sbjct: 154 KPQPELVRDLEPEPEPEP-EPEPEI 177


>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 370

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 44  CTSCLLWCSPFHHGIWCP 97
           C   L+WC P     WCP
Sbjct: 248 CEGVLVWCEPEEDRGWCP 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,743,092
Number of Sequences: 28952
Number of extensions: 200350
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)