Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30096
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13350.1 68415.m01472 C2 domain-containing protein very low s...    29   2.6  
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    28   4.5  
At5g43270.3 68418.m05289 squamosa promoter-binding protein-like ...    28   4.5  
At5g43270.2 68418.m05288 squamosa promoter-binding protein-like ...    28   4.5  
At5g43270.1 68418.m05287 squamosa promoter-binding protein-like ...    28   4.5  

>At2g13350.1 68415.m01472 C2 domain-containing protein very low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 401

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 106 NRCGI*CSVKSAGASGRQSAQK 41
           N CGI CS+   G+SG+++A+K
Sbjct: 375 NICGIECSIVCGGSSGQKAAKK 396


>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 519 LRVRISCEWCSMRSVSCNRCGSGVSRYRSD 430
           L+V + CE C+ R V C R   GV   +S+
Sbjct: 30  LKVDMHCEGCASRIVKCVRSFQGVETVKSE 59


>At5g43270.3 68418.m05289 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 CSSFLFNLRCVSRLQELLRPCRRRLSTH 344
           CS F     C+S   E  R CRRRLS H
Sbjct: 213 CSRF----HCLSEFDEKKRSCRRRLSDH 236


>At5g43270.2 68418.m05288 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 CSSFLFNLRCVSRLQELLRPCRRRLSTH 344
           CS F     C+S   E  R CRRRLS H
Sbjct: 213 CSRF----HCLSEFDEKKRSCRRRLSDH 236


>At5g43270.1 68418.m05287 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 261 CSSFLFNLRCVSRLQELLRPCRRRLSTH 344
           CS F     C+S   E  R CRRRLS H
Sbjct: 213 CSRF----HCLSEFDEKKRSCRRRLSDH 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,428,560
Number of Sequences: 28952
Number of extensions: 73652
Number of successful extensions: 250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)