Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30092
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    31   0.35 
At3g56120.1 68416.m06237 Met-10+ like family protein non-consens...    26   7.5  
At1g71400.1 68414.m08246 disease resistance family protein / LRR...    26   7.5  
At1g17870.1 68414.m02211 expressed protein contains 6 transmembr...    26   7.5  

>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 157 KVTPYKLLEVLSRCRITLRFPSQLLGTKKVVQRTM*SQPWK 35
           K+  Y L E+    R  LRFP    GTK+ +     ++PWK
Sbjct: 201 KIMIYVLSEMDGILRKLLRFPEDTRGTKETILELTNTRPWK 241


>At3g56120.1 68416.m06237 Met-10+ like family protein non-consensus
           TT donor splice site at exon 4 ; contains Pfam profile
           PF02475: Met-10+ like-protein
          Length = 468

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 117 HRDNTSNNLYGVTLQGHD*HITSVVIKKNFFVPSIYIHSYCFNNAT 254
           H D+   NL    LQ  D   ++V+ KK +  P   IH YCF  A+
Sbjct: 373 HIDHVIMNLPASALQFLD-SFSNVIQKKYWKGPLPLIHCYCFIRAS 417


>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 72  FLVPNNWEGNLRVIRHRDNTSNNLYG--VTLQGHD*HITSVVIKKNFFVPSI 221
           +L  N+    L+ +RH D T+ NLYG   +  G+  H+T V +  N FV  I
Sbjct: 99  YLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEI 150


>At1g17870.1 68414.m02211 expressed protein contains 6 transmembrane
           domains; similar to predicted metalloproteases
          Length = 573

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 54  IVLCTTFLVPNNWEGNLRVIRHRDNTSNN 140
           + L  +FLVP+NW G L V+ + ++   N
Sbjct: 335 VKLSPSFLVPSNWTGCLGVMNNYESLLPN 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,938,993
Number of Sequences: 28952
Number of extensions: 125961
Number of successful extensions: 248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)