Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30087
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ...    35   0.038
At1g29890.1 68414.m03653 acetyltransferase-related low similarit...    32   0.26 

>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
           O-acetyltransferase [Homo sapiens] GI:17016934
          Length = 540

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
 Frame = -2

Query: 425 KYLSNS*KSETLKLMTIKISFSIEKVDTLK---RFG*ICIYIFICNRLSLFALSTK 267
           K+ ++S ++  ++ ++++ SF +E   TL+    FG I IY +IC+R  L   STK
Sbjct: 76  KFHNSSIRTNIIRFLSMEDSFLLEHRATLRAMSEFGAILIYFYICDRTELLGDSTK 131


>At1g29890.1 68414.m03653 acetyltransferase-related low similarity
           to O-acetyltransferase [Cryptococcus neoformans var.
           neoformans] GI:17063556
          Length = 470

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 389 KLMTIKISFSIEKVDTLK---RFG*ICIYIFICNRLSLFALSTK 267
           + +T++ SF +E   TL+    FG I +Y +IC+R SL   S K
Sbjct: 18  RFLTLEDSFLLENRATLRAMAEFGAILLYFYICDRTSLIGQSQK 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,851
Number of Sequences: 28952
Number of extensions: 167097
Number of successful extensions: 227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)