Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30085
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 114 3e-26
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 114 3e-26
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 114 3e-26
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 114 3e-26
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 114 3e-26
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 1.8
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 1.8
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 27 5.4
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 27 5.4
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 7.1
At5g43300.1 68418.m05292 glycerophosphoryl diester phosphodieste... 26 9.4
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 114 bits (274), Expect = 3e-26
Identities = 54/79 (68%), Positives = 64/79 (81%)
Frame = +2
Query: 17 MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
MG VRTKTV EKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 197 LRHSQVRGISIKLQEEERE 253
++ VRGIS+KLQEEERE
Sbjct: 61 IQKGPVRGISLKLQEEERE 79
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 114 bits (274), Expect = 3e-26
Identities = 54/79 (68%), Positives = 64/79 (81%)
Frame = +2
Query: 17 MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
MG VRTKTV EKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 197 LRHSQVRGISIKLQEEERE 253
++ VRGIS+KLQEEERE
Sbjct: 61 IQKGPVRGISLKLQEEERE 79
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 114 bits (274), Expect = 3e-26
Identities = 54/79 (68%), Positives = 64/79 (81%)
Frame = +2
Query: 17 MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
MG VRTKTV EKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 197 LRHSQVRGISIKLQEEERE 253
++ VRGIS+KLQEEERE
Sbjct: 61 IQKGPVRGISLKLQEEERE 79
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 114 bits (274), Expect = 3e-26
Identities = 54/79 (68%), Positives = 64/79 (81%)
Frame = +2
Query: 17 MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
MG VRTKTV EKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 197 LRHSQVRGISIKLQEEERE 253
++ VRGIS+KLQEEERE
Sbjct: 61 IQKGPVRGISLKLQEEERE 79
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 114 bits (274), Expect = 3e-26
Identities = 54/79 (68%), Positives = 64/79 (81%)
Frame = +2
Query: 17 MGXVRTKTVXXXXXXXXEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 196
MG VRTKTV EKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 197 LRHSQVRGISIKLQEEERE 253
++ VRGIS+KLQEEERE
Sbjct: 61 IQKGPVRGISLKLQEEERE 79
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 380 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 273
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 380 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 273
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 86 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERE 253
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKK 735
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 86 LTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERE 253
LTL +D ICEE A +K + + L + L ++R + ++LQ EE++
Sbjct: 679 LTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKK 735
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 78 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 170
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
>At5g43300.1 68418.m05292 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam profile
PF03009: Glycerophosphoryl diester phosphodiesterase
family
Length = 333
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 366 QAINIVEVQHLQHILGV-GVYFDDVMFESRHFWDIVVT 256
Q N+VEV +LQ+++GV GV D V S +I VT
Sbjct: 254 QLNNVVEVIYLQYLMGVEGVIVDMVKDISEAIANIEVT 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,280,694
Number of Sequences: 28952
Number of extensions: 148808
Number of successful extensions: 429
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -