Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30084
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    29   2.1  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    29   2.1  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    29   2.1  
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to...    29   2.8  
At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR...    29   3.7  
At3g58110.1 68416.m06480 expressed protein                             28   6.5  
At2g42370.1 68415.m05243 expressed protein                             28   6.5  
At2g10440.1 68415.m01097 hypothetical protein                          27   8.6  

>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 351 EKLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCVNKDKKELR 515
           ++L   QQ+QF+   +    H+L S+QL QL T +    F   S C N     L+
Sbjct: 756 QRLQQQQQQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF--PSSCTNNGLSTLQ 808


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 351 EKLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCVNKDKKELR 515
           ++L   QQ+QF+   +    H+L S+QL QL T +    F   S C N     L+
Sbjct: 755 QRLQQQQQQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF--PSSCTNNGLSTLQ 807


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 351 EKLNAPQQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVRSVCVNKDKKELR 515
           ++L   QQ+QF+   +    H+L S+QL QL T +    F   S C N     L+
Sbjct: 756 QRLQQQQQQQFLSPQSQLPHHQLQSQQLQQLPTLSQGHQF--PSSCTNNGLSTLQ 808


>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
           acyl CoA reductase [Simmondsia chinensis] GI:5020215;
           contains Pfam profile PF03015: Male sterility protein
          Length = 402

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +1

Query: 25  IKHLVFAIGEPCIGRCFLLDAIESAIYDVIFKNMAVTTSLITATPDLKIGGGKNLNQVVG 204
           +  ++ A G+  + +CFL+D   +++ D+I  +M V  ++ITA      G G ++   VG
Sbjct: 284 VDSVIIAYGKGVL-KCFLVDV--NSVCDMIPVDM-VANAMITAAAKHAGGSGVHMVYHVG 339

Query: 205 FSEHSVVLLGE 237
            S  + V  GE
Sbjct: 340 SSHQNPVTFGE 350


>At5g17970.1 68418.m02108 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  RRNRVSHLRCDLQEHGGYDIADHGHTRPQDWRWKEFESSRW 203
           RRN +SHL  +LQ H G D    G  +     W E + + W
Sbjct: 28  RRNFLSHLHKELQ-HNGIDAFKDGGIKRSRSIWPELKQAIW 67


>At3g58110.1 68416.m06480 expressed protein
          Length = 784

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 309 VEGTGGYVFSSTNFEKLNAPQQKQ 380
           V+G+GG V S+T  EKL   Q+++
Sbjct: 687 VKGSGGLVLSTTEIEKLRLKQEEE 710


>At2g42370.1 68415.m05243 expressed protein
          Length = 715

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 309 VEGTGGYVFSSTNFEKLNAPQQKQ 380
           V+GTGG V S+   EKL   ++K+
Sbjct: 624 VKGTGGLVLSTAEIEKLRLKEEKE 647


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 1/111 (0%)
 Frame = +3

Query: 120 EHGGYDIADHGHTRPQDWRWKEFESSRWIQ*AFRRAAWREETN*RSETLRGTLQKTDDSC 299
           E   Y IA    T  Q W  +  +S+  +    +   +      +++T   T   T  S 
Sbjct: 65  EENFYSIATDKTTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAAT--SS 122

Query: 300 VNFVEGTGGYVFSSTNFEKLNAPQQKQ-FIQTAANTITHKLLSEQLSQLCT 449
             FVE T    FSS    K +   QK  F  T       + L  QL+ L T
Sbjct: 123 AKFVETTYSTAFSSIKLTKHSITDQKSVFDTTEQKRQEQEQLINQLTNLPT 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,818,387
Number of Sequences: 28952
Number of extensions: 238175
Number of successful extensions: 621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)