Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30081
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12150.1 68416.m01514 expressed protein                             29   2.1  
At1g51540.1 68414.m05801 kelch repeat-containing protein contain...    29   2.1  
At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM...    27   8.6  

>At3g12150.1 68416.m01514 expressed protein
          Length = 363

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 437 SWPPEITYPILRTEWQTVDDTL 372
           +WPP +  P+ RT W+T   TL
Sbjct: 62  NWPPPLVRPVWRTVWETKTATL 83


>At1g51540.1 68414.m05801 kelch repeat-containing protein contains
           Pfam profile PF01344: Kelch motif
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/50 (38%), Positives = 21/50 (42%)
 Frame = -2

Query: 452 TKILLSWPPEITYPILRTEWQTVDDTLSTSFRIH*QCF*VPQAPVTVVVE 303
           TK L  W P   YP     W TVDD L   F    +C  V Q     +VE
Sbjct: 246 TKPLQIWNPPRFYPE-EAMWMTVDDNLDDGFVSFARCMRVSQLVGVGIVE 294


>At1g75200.1 68414.m08736 flavodoxin family protein / radical SAM
           domain-containing protein contains Pfam profiles
           PF00258: Flavodoxin, PF04055: radical SAM domain protein
          Length = 647

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 340 FRYLKHRSPLSSNPSHATKGSVSKLIYGLQPTGS 239
           +R LKH   LS NPS   K S  K+ + +  TG+
Sbjct: 28  YRRLKHLKNLSLNPSSTLKASRGKIFF-ISQTGT 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,187
Number of Sequences: 28952
Number of extensions: 336232
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)