Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30079
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04620.1 68415.m00470 cation efflux family protein potential ...    46   2e-05
At1g33610.1 68414.m04160 leucine-rich repeat family protein cont...    30   1.2  
At5g04960.1 68418.m00525 pectinesterase family protein contains ...    28   3.7  
At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containi...    27   6.5  
At5g38450.1 68418.m04648 cytochrome P450 family protein similar ...    27   6.5  

>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/81 (28%), Positives = 41/81 (50%)
 Frame = +1

Query: 4   VLMQRTPTSLERALPSLYTRVVGLAGVHXVQEPHFWTLCSEIHVGAMKLEVAREVDPRYV 183
           +L+QR P +  + L      ++   GV  +Q  H W+  +   V  + L V+ + D    
Sbjct: 714 ILLQRVPRAHRQDLKEAMRNILKTKGVCSIQRLHVWSFTNSDVVATLHLLVSADSDKTDT 773

Query: 184 TXQVARIFREAGVKHLTVQLD 246
             QV+R+  +AGVK  T+Q++
Sbjct: 774 KLQVSRLLEDAGVKDWTLQVE 794


>At1g33610.1 68414.m04160 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 907

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 183 HVSGVHLAGHLELHGTNVNFTAKSPKVRFLD 91
           H+S + L GH+ + G+   F  + PK+R++D
Sbjct: 103 HLSVISLGGHVNITGSFPKFLLQLPKLRYVD 133


>At5g04960.1 68418.m00525 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 564

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 107 FGLFAVKFTLVP*SSRWPARWTPDT*XTRSRGSSGKPASNISPYN*TILPLIRLTDHKSY 286
           FG  AV F       R P +   +T   + R    +  + IS +N TI PL  LTD +++
Sbjct: 409 FGNAAVVFQKCEILPRRPMKGQQNTITAQGRKDPNQN-TGISIHNCTIKPLDNLTDIQTF 467

Query: 287 LGFNARENWRGFRT 328
           LG      W+ F T
Sbjct: 468 LG----RPWKDFST 477


>At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 680

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 255 GRIV*LYGEMFDAGFPEDPRDLVXHVSGVHLAGHLE 148
           G ++ ++ EM ++G+P D       V G+ + GHLE
Sbjct: 447 GMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLE 482


>At5g38450.1 68418.m04648 cytochrome P450 family protein similar to
           cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
          Length = 518

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 378 LLTASIFTRINLTVSRNVRNPRQFSLALKPK 286
           ++ A++ ++ N T+S+N R+     L +KPK
Sbjct: 476 IILATLISKFNFTISKNYRHAPIVVLTIKPK 506


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,573,765
Number of Sequences: 28952
Number of extensions: 189593
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)