Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30052
(523 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 94 4e-20
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 94 6e-20
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 93 1e-19
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 30 0.82
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 30 1.1
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.4
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 1.9
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 2.5
At1g26330.1 68414.m03211 hypothetical protein 28 4.4
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 27 5.8
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.7
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 27 7.7
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 27 7.7
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 27 7.7
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 94.3 bits (224), Expect = 4e-20
Identities = 39/78 (50%), Positives = 57/78 (73%)
Frame = +2
Query: 29 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 208
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 209 YIRSPVGVKTVTKIFVGA 262
Y+R +GV +I+ G+
Sbjct: 66 YLRGGLGVGAFRRIYGGS 83
Score = 64.9 bits (151), Expect = 3e-11
Identities = 27/54 (50%), Positives = 38/54 (70%)
Frame = +1
Query: 256 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 417
G KRNG P HFC+SSG +AR LQ L+ + +V+ GGR +T+ G+RDLD++
Sbjct: 82 GSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 93.9 bits (223), Expect = 6e-20
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +2
Query: 29 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 208
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 209 YIRSPVGVKTVTKIFVGA 262
Y+R +GV +I+ G+
Sbjct: 66 YLRGGLGVGAFRRIYGGS 83
Score = 67.7 bits (158), Expect = 4e-12
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +1
Query: 256 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 417
G KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 82 GSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 93.1 bits (221), Expect = 1e-19
Identities = 38/78 (48%), Positives = 56/78 (71%)
Frame = +2
Query: 29 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 208
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 209 YIRSPVGVKTVTKIFVGA 262
Y+R +GV +I+ G+
Sbjct: 66 YLRGGLGVGAFRRIYGGS 83
Score = 67.7 bits (158), Expect = 4e-12
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +1
Query: 256 GRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 417
G KRNG P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 82 GSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 30.3 bits (65), Expect = 0.82
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 413 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR-PQRSW*Q 237
+S SRL C+ + + NA +D +DL+K G +PL L+ Q++W +
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLKLKQKNWSR 237
Query: 236 S 234
S
Sbjct: 238 S 238
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 193 HPSSYLHSLT-CWSQDCHQDLCGRKRNGVTPSHFCRSSGSI 312
HPS H+L C + H DLCGR+ N + S++C G I
Sbjct: 62 HPSHPNHTLELCSNLRFHCDLCGRRTNYL--SYYCEICGFI 100
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 373 HRPELSQQASMPPTIAKPCVQYCLM 299
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 74 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 220
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 289 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 417
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 331 IAKPCVQYCLMTCRNVKV*LHYVCAHKDLGD 239
+A PC+ C+M + + H V H +G+
Sbjct: 977 LANPCISSCIMELKKIPKCPHLVIGHNGIGE 1007
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 27.5 bits (58), Expect = 5.8
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -3
Query: 311 ILPDDLQKCEGVTPLRLRPQRSW*QS*LQQVSECKY--DEGWQHNAHRTNQGHTEPAL*S 138
I+ + L GV P L P+++ + L S+C++ +G +N ++ A
Sbjct: 72 IVLNGLNHDAGVKPEHLEPEKTEEKKDLDG-SKCRFRHTDGRWYNGRIIGFEGSDSA--- 127
Query: 137 ELSLQDPCAQVP*LCPFFLSEQRQF*QSCLVQHPL 33
++S P ++ +C FF+ ++ +F SC H L
Sbjct: 128 KISFLTPTSESMMICKFFMQQRCRFGSSCRSSHGL 162
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 38 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 154
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 208 LHSLTCWSQDCHQDLCGRKRNGVTPSHFCRSSGSIARKALQSL 336
LH +TC + C C + + C++ G IA K + SL
Sbjct: 1571 LHVMTCCTAQCQYPRCRVIKGLIRHGLVCKTRGCIACKKMWSL 1613
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 209 YIRSPVGVKTVTKIFVGANVME 274
Y RSP G T TK+FVG E
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWE 27
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 209 YIRSPVGVKTVTKIFVGANVME 274
Y RSP G T TK+FVG E
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWE 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,260,336
Number of Sequences: 28952
Number of extensions: 202028
Number of successful extensions: 463
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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