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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_H04
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   287   4e-78
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   281   3e-76
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   281   3e-76
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           281   3e-76
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   281   3e-76
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             279   1e-75
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    58   4e-09
At3g18530.1 68416.m02357 expressed protein similar to unknown pr...    29   3.6  
At3g01450.1 68416.m00069 expressed protein                             29   3.6  
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    28   4.7  
At2g04050.1 68415.m00386 MATE efflux family protein similar to r...    28   6.2  
At3g61590.1 68416.m06898 F-box family protein contains weak hit ...    27   8.2  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  287 bits (704), Expect = 4e-78
 Identities = 127/157 (80%), Positives = 148/157 (94%)
 Frame = +2

Query: 182 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 361
           ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID  +GPSL DEV+KIMPVQKQ
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100

Query: 362 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 541
           TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160

Query: 542 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 652
           KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKK 197


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  281 bits (689), Expect = 3e-76
 Identities = 127/157 (80%), Positives = 144/157 (91%)
 Frame = +2

Query: 182 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 361
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 362 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 541
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 542 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 652
           KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKK 205


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  281 bits (689), Expect = 3e-76
 Identities = 127/157 (80%), Positives = 144/157 (91%)
 Frame = +2

Query: 182 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 361
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 362 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 541
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 542 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 652
           KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKK 205


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  281 bits (689), Expect = 3e-76
 Identities = 127/157 (80%), Positives = 144/157 (91%)
 Frame = +2

Query: 182 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 361
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 362 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 541
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 542 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 652
           KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKK 205


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  281 bits (689), Expect = 3e-76
 Identities = 127/157 (80%), Positives = 144/157 (91%)
 Frame = +2

Query: 182 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 361
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 362 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 541
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168

Query: 542 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 652
           KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKK 205


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  279 bits (684), Expect = 1e-75
 Identities = 125/157 (79%), Positives = 144/157 (91%)
 Frame = +2

Query: 182 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 361
           ++++WVPVTKLGRLV  G I ++E IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 362 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 541
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169

Query: 542 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXK 652
           KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKK 206


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 31/103 (30%), Positives = 58/103 (56%)
 Frame = +2

Query: 326 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 505
           + V+++  V K  + G++ +F+A V +GD  G++G+G   +KEV  A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208

Query: 506 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVS 634
            V        + K  T P +  G  G+  V L PA  GTG+++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIA 244


>At3g18530.1 68416.m02357 expressed protein similar to unknown
           protein GB:AAF24615 from [Arabidopsis thaliana]
          Length = 297

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 534 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 355
           LL Q  L++ +        A R  VA +  H +P  + P L P   N   R+R  A  CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224

Query: 354 CTGMIFRTSSFR 319
            +G + R  + R
Sbjct: 225 -SGCVPRLEAAR 235


>At3g01450.1 68416.m00069 expressed protein
          Length = 326

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -3

Query: 555 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 376
           T+    +LL Q  L++ +        A +  VA +  H +P  + P L P   N   R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217

Query: 375 CPARVCF 355
             A  CF
Sbjct: 218 AKASTCF 224


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 392 AFVAIGDNNGHIGLGVKCSKE 454
           AFVA G NN H+G  V  S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169


>At2g04050.1 68415.m00386 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 548 HTVPCKVTGKCGSVTVRL 601
           H VPCK T K G VTV L
Sbjct: 11  HLVPCKDTWKSGQVTVEL 28


>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
           Pisum sativum, EMBL:AF004843
          Length = 411

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 24  LSEPIVQQWRTLLQP 68
           +S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,982
Number of Sequences: 28952
Number of extensions: 300736
Number of successful extensions: 841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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