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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G13
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   188   2e-48
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   186   1e-47
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   186   1e-47
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    40   0.001
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    29   2.7  
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   8.3  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   8.3  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   8.3  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  188 bits (459), Expect = 2e-48
 Identities = 90/175 (51%), Positives = 123/175 (70%), Gaps = 5/175 (2%)
 Frame = +2

Query: 38  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 202
           MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 203 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 382
           + WFGS+K  A++RT  SHV+N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 383 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNKDI 547
           LGEK +R+V+M  GV +V S K KDE+I+EGN +E VS S ALI Q   V  KDI
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDI 175


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  186 bits (452), Expect = 1e-47
 Identities = 87/175 (49%), Positives = 124/175 (70%), Gaps = 5/175 (2%)
 Frame = +2

Query: 38  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 202
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 203 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 382
           + WFG++K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 383 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNKDI 547
           LGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   V  KDI
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDI 175


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  186 bits (452), Expect = 1e-47
 Identities = 87/175 (49%), Positives = 124/175 (70%), Gaps = 5/175 (2%)
 Frame = +2

Query: 38  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKV 202
           MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 203 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNF 382
           + WFG++K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 383 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVXNKDI 547
           LGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   V  KDI
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDI 175


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 31/157 (19%), Positives = 70/157 (44%)
 Frame = +2

Query: 50  VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 229
           +  Q + +P  +T+ ++ + + VKGP G L   +    V++       L+V+K   +++ 
Sbjct: 46  IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104

Query: 230 LAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 409
                   +  +NM+ GV+KGF+ K+  V   +     T +G  ++     L   +   V
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYR---ATVDGKELV-----LNLGFSHPV 156

Query: 410 KMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 520
           KM    ++    ++   + + G    ++   AA +++
Sbjct: 157 KMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRK 193


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = +2

Query: 11  GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 190
           G  +    + K     +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P 
Sbjct: 188 GIAIPHHKDEKDENKTKELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPT 247

Query: 191 LLKV 202
           L  V
Sbjct: 248 LFNV 251


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 391 LPQEVTYLN--N*ITLSGDTVNGEVSIHSTHLVLEAFSYSFNHV 266
           +P+EV  L   N + LS +  +GE+ +   +L L   + S+NH+
Sbjct: 539 IPKEVGILPVLNYLDLSSNQFSGEIPLELQNLKLNVLNLSYNHL 582


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 238 GGKLLFGSEPFLN-LQETRVYHANVNSQVFKVP 143
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 62  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 172
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,172,513
Number of Sequences: 28952
Number of extensions: 252952
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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