Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G08
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri...   132   1e-31
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si...   132   1e-31
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si...   132   1e-31
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)         131   3e-31
At3g46100.1 68416.m04988 histidyl-tRNA synthetase / histidine--t...    28   3.2  
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ...    28   4.2  
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t...    27   5.5  
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si...    27   5.5  
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co...    27   5.5  
At5g19400.1 68418.m02312 expressed protein                             27   9.7  

>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
           ribosomal protein L13a -Lupinus luteus,PID:e1237871
          Length = 206

 Score =  132 bits (320), Expect = 1e-31
 Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
 Frame = +2

Query: 152 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 328
           + I L+  LV  K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHKT+RG  A
Sbjct: 44  EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAA 103

Query: 329 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
           L RL+ ++G PPP+D               L+ G  YC +GRLS E+GW + D +++LE
Sbjct: 104 LARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELE 162



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 73  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFSEQ 186
           H+LGRLA+  AK LL G +VVVVRCE+I +SG    ++
Sbjct: 19  HMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQK 56


>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
           similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
           [Rattus norvegicus]
          Length = 206

 Score =  132 bits (320), Expect = 1e-31
 Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
 Frame = +2

Query: 152 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 328
           + I L+  LV  K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHKT+RG  A
Sbjct: 44  EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAA 103

Query: 329 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
           L RL+ ++G PPP+D               L+ G  YC +GRLS E+GW + D +++LE
Sbjct: 104 LARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE 162



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 73  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFSEQ 186
           H+ GRLA++IAK LL G  VVVVRCE+I +SG    ++
Sbjct: 19  HMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQK 56


>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
           similar to ribosomal protein L13A GB:O49885 [Lupinus
           luteus]
          Length = 206

 Score =  132 bits (320), Expect = 1e-31
 Identities = 60/119 (50%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
 Frame = +2

Query: 152 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 328
           + I L+  LV  K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHKT+RG NA
Sbjct: 44  EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANA 103

Query: 329 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
           L RL+ ++G P P+D               L+ G  YC +GRLS E+GW + D +++LE
Sbjct: 104 LARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE 162



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +1

Query: 73  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFSEQ 186
           H+LGRLA+V+AK LL G  +VVVRCE+I +SG    ++
Sbjct: 19  HMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQK 56


>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
          Length = 206

 Score =  131 bits (316), Expect = 3e-31
 Identities = 60/119 (50%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
 Frame = +2

Query: 152 KSISLATSLVN-KLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNA 328
           + I L+  LV  K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHKT+RG  A
Sbjct: 44  EEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAA 103

Query: 329 LRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 505
           L RL+ Y+G P P+D               L+ G  YC +GRLS E+GW + D +++LE
Sbjct: 104 LARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELE 162



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +1

Query: 73  HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFSEQ 186
           H+LGRLA++ AK LL G KVV+VRCE+I +SG    ++
Sbjct: 19  HMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQK 56


>At3g46100.1 68416.m04988 histidyl-tRNA synthetase / histidine--tRNA
           ligase identical to histidyl-tRNA synthetase
           [Arabidopsis thaliana] GI:3659909
          Length = 486

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 65  PVVICWAVWRQSSPRSFSKGTKLLWFAANKSISLATSLVNKLKLMSFLRKRCNVNPARGP 244
           P+++   V   S PR FS   +L+  AAN     + S+V  L       K+ +VNP +G 
Sbjct: 17  PILLLDLVSSCSPPRQFSIPRRLICAAANGG-GRSGSIVAPLVTEEDFHKKIDVNPPKGT 75

Query: 245 FHF 253
             F
Sbjct: 76  RDF 78


>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
           contains Pfam profile:PF00320 GATA:GATA zinc finger
          Length = 190

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 72  SSAGPSGGSHRQGPSRREQSCCGSLRTNQYLWQLL**TNSSLCHSC 209
           SS+G  GGS   G ++R    CG++RT   LW+       SLC++C
Sbjct: 27  SSSGSGGGSS-SGDTKRTCVDCGTIRTP--LWRGGPAGPKSLCNAC 69


>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
           DNA-binding protein [Triticum aestivum] GI:6958202;
           contains Pfam profile: PF01535 PPR repeat
          Length = 610

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 140 FAANKSISLATSLVNKLKLMS--FLRKRCNVNPARGPFHFRAPSKILWKTVRGM 295
           FA N+ + L  S+ ++ K+     L +R N+ P+R  +HF   SK L   + GM
Sbjct: 278 FACNQLL-LLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330


>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
           similar to ribosomal protein L13 GI:170132 from
           [Spinacia oleracea]
          Length = 241

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 254 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 373
           R P +I+   VRGM+P K   G+     L+ Y G   P +
Sbjct: 185 RIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223


>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
           contains Pfam profiles: PF02551 acyl-CoA thioesterase,
           PF00027 cyclic nucleotide-binding domain
          Length = 427

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 242 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 358
           P   + PS  L K  + ++P +  +G   +R  +T+DGC
Sbjct: 14  PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52


>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 469  NFMGQSAYMTVITARFQTEDT*SSRHYNTSTV 374
            NF+ ++   T +  ++Q + T SSRH++T+ V
Sbjct: 1032 NFVDKNHQSTQLPEQYQGQSTWSSRHFDTAHV 1063


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,882,020
Number of Sequences: 28952
Number of extensions: 245833
Number of successful extensions: 664
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)