Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_G03
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30030.1 68417.m04273 aspartyl protease family protein contai...    28   2.8  
At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma mem...    27   6.6  
At2g31020.1 68415.m03782 oxysterol-binding family protein simila...    27   8.7  

>At4g30030.1 68417.m04273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 424

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 370 RDSRYRHRTVYTKNHTNSTIFSECT*LNPCYHLKYRSVTRGTTALGRRRIFLHLTDE 200
           R S YR+ +  +  H    IF +    N  YHL+YR  +     L   ++    +D+
Sbjct: 123 RSSTYRNASCVSAPHAMPQIFRDEKTGNCQYHLRYRDFSNTRGILAEEKLTFETSDD 179


>At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca(2+)-ATPase, putative
           (ACA12) identical to SP|Q9LY77 Potential
           calcium-transporting ATPase 12, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 12) {Arabidopsis
           thaliana}; similar to SP|Q9LF79 Calcium-transporting
           ATPase 8, plasma membrane-type (EC 3.6.3.8)
           (Ca2+-ATPase, isoform 8) {Arabidopsis thaliana};
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 1033

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 127 FIEIIIHKISNIARNRDVTAVSKISHRLNVKI 222
           F+ I++  +SN  + R    +SKIS+ + V++
Sbjct: 201 FLVIVVSALSNFRQERQFDKLSKISNNIKVEV 232


>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 760

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 271 KYRSVTRGTTALGRRRIFLHLTDEIFSIRPSRLDYVRYSIF 149
           K  + T  T    RR+ F  +  ++ SIR SR D  R+SIF
Sbjct: 135 KRHAATNNTNHQLRRKPFGEVHLKVSSIRESRSDDKRFSIF 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,729,629
Number of Sequences: 28952
Number of extensions: 163645
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)