Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G02
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo... 125 1e-29
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A) 124 2e-29
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C) 122 6e-29
At4g17250.1 68417.m02594 expressed protein 29 1.0
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse... 27 4.1
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse... 27 4.1
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 26 7.2
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 26 9.6
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 26 9.6
>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
ribosomal protein L31, Nicotiana glutinosa, U23784
Length = 119
Score = 125 bits (301), Expect = 1e-29
Identities = 60/115 (52%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Frame = +2
Query: 2 SKGKSAINXVVTREYTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNK 181
S+ K VVTREYT+NLH+RLH FKK+AP AIKEIRKFAEK+MGT D+RVD +LNK
Sbjct: 2 SEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNK 61
Query: 182 FLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 340
+WSKG+R P NDDED+ + F+LVT +P + GL T+ ++
Sbjct: 62 QIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116
>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
Length = 119
Score = 124 bits (299), Expect = 2e-29
Identities = 60/117 (51%), Positives = 76/117 (64%), Gaps = 2/117 (1%)
Frame = +2
Query: 5 KGKSAINXVVTREYTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNKF 184
KGK VVTREYT+NLH+RLH FKK+AP AIKEIRKFA K MGT D+RVD +LNK
Sbjct: 3 KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62
Query: 185 LWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 349
+WSKG+R P NDDED+ + F+LVT +P + GL T+ ++ +
Sbjct: 63 IWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119
>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
Length = 119
Score = 122 bits (295), Expect = 6e-29
Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Frame = +2
Query: 2 SKGKSAINXVVTREYTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNK 181
S+ K V+TREYT+NLH+RLH FKK+AP AIKEIRKFAEK MGT D+RVD +LNK
Sbjct: 2 SEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNK 61
Query: 182 FLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 340
+WSKG+R P NDDED+ + F+LVT +P + GL T+ ++
Sbjct: 62 QIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116
>At4g17250.1 68417.m02594 expressed protein
Length = 416
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 47 TVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVD 166
TV KR + +KKR A+K+ + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208
>At3g19400.2 68416.m02460 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 290
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 41 EYTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNKF 184
++ V K +G+G K+R K+ KF ++ PD + L +F
Sbjct: 46 QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
>At3g19400.1 68416.m02461 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 362
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 41 EYTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVDTRLNKF 184
++ V K +G+G K+R K+ KF ++ PD + L +F
Sbjct: 46 QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 236 KASHGHGREHF*LP*TKGICLSE 168
+A G H+ +P T+G+CLSE
Sbjct: 342 EAREGEKNGHYHMPETRGLCLSE 364
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 236 KASHGHGREHF*LP*TKGICLSE 168
+A G H LP T+G+CLSE
Sbjct: 351 RAMEGEKHGHHHLPETRGLCLSE 373
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 236 KASHGHGREHF*LP*TKGICLSE 168
+A G H LP T+G+CLSE
Sbjct: 155 RAMEGEKHGHHHLPETRGLCLSE 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,470,618
Number of Sequences: 28952
Number of extensions: 127849
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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