Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_G01
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34440.1 68417.m04894 protein kinase family protein contains ... 38 0.008
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.67
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.67
At3g60630.1 68416.m06784 scarecrow transcription factor family p... 31 0.67
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 31 0.67
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 1.2
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.7
At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1) domain... 29 2.7
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 2.7
At1g70990.1 68414.m08190 proline-rich family protein 29 3.6
At4g10510.1 68417.m01723 subtilase family protein contains simil... 28 6.3
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 27 8.3
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 27 8.3
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 27 8.3
At3g58740.1 68416.m06547 citrate synthase, glyoxysomal, putative... 27 8.3
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family... 27 8.3
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQNPAPILTQNPN--MGYGFPPLNTPNMPYYMSNQNP 616
P Q+ P +P PP NP+P +NP+ G P+ P P SNQ+P
Sbjct: 61 PPTQETSPPTSPSSSPPVVANPSPQTPENPSPPAPEGSTPVTPPAPPQTPSNQSP 115
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = +2
Query: 494 GVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQP 640
G PP P P Q P GY PP N P Y S Q GY T P
Sbjct: 557 GKSPPPIAPPGPPAPQPPTQGY--PPSNQP-PGAYPSQQYATGGYSTAP 602
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.67
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = +2
Query: 494 GVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQP 640
G PP P P Q P GY PP N P Y S Q GY T P
Sbjct: 557 GKSPPPIAPPGPPAPQPPTQGY--PPSNQP-PGAYPSQQYATGGYSTAP 602
>At3g60630.1 68416.m06784 scarecrow transcription factor family
protein scarecrow-like 6, Arabidopsis thaliana,
EMBL:AF036303
Length = 623
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 542 NPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQP 640
NP GYGFP N P + + NP G+ + P
Sbjct: 155 NPLFGYGFPFQNAPEEEKFQISINPNPGFFSDP 187
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 482 PXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNP 616
P + P +N NP P + NPN PP+ PN P SN NP
Sbjct: 140 PPDSSSNPNSNPNP-PESSSNPN-----PPVTVPNPPESSSNPNP 178
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 503 PPANQNP-APILTQNPNMGYGFPPLNTPNMPYYMSNQNP 616
P ++ NP P + NPN PP+ PN P SN NP
Sbjct: 103 PESSSNPNPPDSSSNPNSNPN-PPVTVPNPPESSSNPNP 140
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 500 CPPANQN-PAPILTQNPNMGYGFPPLNTPNMPYYM--SNQNPYTGYGTQ 637
CPP Q+ P P Q P+ +P +P+ PYY S+ P T Y TQ
Sbjct: 571 CPPTTQSPPPPKYEQTPSPREYYP---SPSPPYYQYTSSPPPPTYYATQ 616
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 545 PNMGYGF---PPLNTPNMPYYMSNQNPYTGYGTQPQQAQ 652
P GYG+ PP PN YY YTGYG QQ Q
Sbjct: 354 PQGGYGYAAQPPTQDPNA-YY----GGYTGYGNYQQQRQ 387
>At5g09620.1 68418.m01113 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein predicted proteins,
Arabidopsis thaliana and Drosophila melanogaster
contains Pfam profile PF00564: PB1 domain
Length = 531
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 503 PPANQNPAPILTQNPNMGYGFPPLNTPNMP---YYMSNQN 613
P QNPAP+ Q P +GY N N+ Y ++QN
Sbjct: 327 PTYTQNPAPVTNQQPPVGYWQGNTNNSNIQGNIYTTTSQN 366
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQN--PAPILT---QNPNMG-YGFPPLNTPNMPYYMSNQNPY 619
PT +QP P PPAN N P+P T + P+ G P L +P+ NQ
Sbjct: 174 PTNPPPIQPSGPATSPPANPNAPPSPFPTVPPKTPSSGPVVSPSLTSPSKGTPTPNQGNG 233
Query: 620 TGYG 631
G G
Sbjct: 234 DGGG 237
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +2
Query: 446 LRCTPTIQQAMQPXNPGVCPPANQN---PAPILTQNPNMGYGFPPLNT 580
++CTP +Q P P PP P P+ P Y PP +T
Sbjct: 82 IKCTPCLQNIPPPSPPPPSPPPPSQACPPPPLPPSPPKKSYCPPPPST 129
>At4g10510.1 68417.m01723 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 765
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 160 IIHNLPADTSYADVKSLIHSKCGLTDVILDNLMSQDNAGKKVTVGVTD 303
++H +P D Y + GL+ NL++Q N G+++ +G+ D
Sbjct: 89 VVHVIP-DRFYKPATTRTWDYLGLSPTNPKNLLNQTNMGEQMIIGIID 135
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQNPAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYGTQ 637
P +QQ QP PPA+ P P G+PP+ + P S+ P Y Q
Sbjct: 173 PQVQQYPQPSG---YPPASGYPPQPSAYPPPSTSGYPPIPSAYPPPPPSSAYPPQPYPPQ 229
Query: 638 P 640
P
Sbjct: 230 P 230
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQN--PAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYG 631
P I + Q P + P Q P P Q P MG G PP P + P YG
Sbjct: 145 PQISRPPQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYG 204
Query: 632 TQP 640
+P
Sbjct: 205 QRP 207
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +2
Query: 458 PTIQQAMQPXNPGVCPPANQN--PAPILTQNPNMGYGFPPLNTPNMPYYMSNQNPYTGYG 631
P I + Q P + P Q P P Q P MG G PP P + P YG
Sbjct: 145 PQISRPPQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYG 204
Query: 632 TQP 640
+P
Sbjct: 205 QRP 207
>At3g58740.1 68416.m06547 citrate synthase, glyoxysomal, putative
strong similarity to SP|P49299 Citrate synthase,
glyoxysomal precursor {Cucurbita maxima}; contains Pfam
profile PF00285: Citrate synthase
Length = 480
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 145 ITMLLIIHNLPADTSYADVKSLIHSKCGLTDVILDNLMSQDN 270
+T LLI NLP+ AD + I + +LD + S N
Sbjct: 135 VTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPN 176
>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 300
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = +2
Query: 479 QPXNPGVCPPANQNPAPILTQN---PNMGY-GF--PPLNTPNMPYYMSNQNPY 619
QP P PP +Q P P Q P MGY G+ PP PN P Q PY
Sbjct: 27 QPPPP---PPQSQPPPPQTQQQTYPPVMGYPGYHQPPPPYPNYPNAPYQQYPY 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,672
Number of Sequences: 28952
Number of extensions: 305631
Number of successful extensions: 984
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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