Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F20
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35753.1 68418.m04282 expressed protein                             30   0.75 
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    30   1.00 
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    30   1.00 
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain...    27   5.3  
At3g58250.1 68416.m06494 meprin and TRAF homology domain-contain...    27   9.3  
At2g06750.1 68415.m00753 hypothetical protein similar to At5g282...    27   9.3  
At1g62410.1 68414.m07041 MIF4G domain-containing protein similar...    27   9.3  

>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 237 DAVPKISCLVAEVLPISAMALSIKFLASST 148
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 391 DGMPRLYCMVREVLSVQPFKIDIAYLSSKT 420


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 237 DAVPKISCLVAEVLPISAMALSIKFLASST 148
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 237 DAVPKISCLVAEVLPISAMALSIKFLASST 148
           D +P++ C+V EVL +    + I +L+S T
Sbjct: 505 DGMPRLYCVVREVLSVQPFKIDIAYLSSKT 534


>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains weak hit to Pfam PF00917: MATH
           domain
          Length = 552

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 326 SQKGYIDINWDKINKKVDKISDKIEKEATG 415
           S   + D++W  + KK+D++ DK E+E +G
Sbjct: 480 SPLSFDDVDW--LEKKLDQVKDKKEREQSG 507


>At3g58250.1 68416.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 356 DKINKKVDKISDKIEKEATGKS 421
           D + KK+D+++ K EKEA G++
Sbjct: 233 DWLKKKLDQVTQKKEKEAAGET 254


>At2g06750.1 68415.m00753 hypothetical protein similar to At5g28270,
           At2g12100, At2g05450, At1g45090, At2g16180
          Length = 435

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 20/23 (86%)
 Frame = +2

Query: 353 WDKINKKVDKISDKIEKEATGKS 421
           ++K+NKKV +++++++K++  KS
Sbjct: 411 FEKVNKKVHQVAEQVQKKSLKKS 433


>At1g62410.1 68414.m07041 MIF4G domain-containing protein similar to
           SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
           P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
           contains Pfam profile PF02854: MIF4G domain
          Length = 223

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 387 VIKLKKKLLENPQIGLKRFLFLSKVIHIIQQGLRED 494
           +++  K L  +PQ+ +   L + K+IH+   G++ D
Sbjct: 169 ILRRLKNLSNHPQLVMSLRLMVGKIIHLHSIGIKSD 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,398,749
Number of Sequences: 28952
Number of extensions: 141246
Number of successful extensions: 416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)