Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_F10
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 176 9e-45
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 176 9e-45
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 173 8e-44
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 172 1e-43
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 172 1e-43
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 79 2e-15
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 79 3e-15
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 78 6e-15
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 78 6e-15
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 77 1e-14
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 77 1e-14
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 75 4e-14
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 74 7e-14
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 74 7e-14
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 74 1e-13
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 74 1e-13
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 73 2e-13
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 69 2e-12
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 68 5e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 68 6e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 66 3e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 64 8e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 64 1e-10
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 62 4e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 61 5e-10
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 61 5e-10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 61 7e-10
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 60 2e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 59 2e-09
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 58 5e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 58 5e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 58 5e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 58 5e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 57 9e-09
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 57 9e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 57 1e-08
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 56 2e-08
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 56 2e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 56 2e-08
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 55 5e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 54 6e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 54 6e-08
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 54 1e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 53 1e-07
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 53 1e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 2e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 52 3e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 52 3e-07
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 52 3e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 52 3e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 52 3e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 52 3e-07
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 52 4e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 1e-06
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 50 2e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 48 5e-06
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 45 4e-05
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 45 4e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 44 7e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 9e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 42 4e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 5e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.003
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 35 0.041
At4g14385.2 68417.m02217 expressed protein 31 0.50
At4g14385.1 68417.m02216 expressed protein 31 0.50
At4g14385.3 68417.m02218 expressed protein 30 1.2
At1g56230.1 68414.m06464 expressed protein 29 2.0
At1g63530.1 68414.m07182 hypothetical protein 28 4.7
At1g55915.1 68414.m06413 expressed protein similar to Hypothetic... 27 8.2
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 176 bits (429), Expect = 9e-45
Identities = 82/132 (62%), Positives = 106/132 (80%)
Frame = +3
Query: 252 SSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRE 431
S++N V +Q + D + D WK+ L++PP D R +T+DVT T+GNEFE++ LKR+
Sbjct: 77 SNANEVVQQTTQPEASSDANGQD--WKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRD 134
Query: 432 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQ 611
LL GI+EKG+EKPSPIQE SIPIAL+G D+LARAKNGTGKTGA+CIPVLE++DP + IQ
Sbjct: 135 LLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ 194
Query: 612 ALIVVPTRELAL 647
A+I+VPTRELAL
Sbjct: 195 AMILVPTRELAL 206
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 176 bits (429), Expect = 9e-45
Identities = 82/132 (62%), Positives = 106/132 (80%)
Frame = +3
Query: 252 SSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRE 431
S++N V +Q + D + D WK+ L++PP D R +T+DVT T+GNEFE++ LKR+
Sbjct: 77 SNANEVVQQTTQPEASSDANGQD--WKATLRLPPPDTRYQTADVTATKGNEFEDYFLKRD 134
Query: 432 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQ 611
LL GI+EKG+EKPSPIQE SIPIAL+G D+LARAKNGTGKTGA+CIPVLE++DP + IQ
Sbjct: 135 LLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ 194
Query: 612 ALIVVPTRELAL 647
A+I+VPTRELAL
Sbjct: 195 AMILVPTRELAL 206
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 173 bits (421), Expect = 8e-44
Identities = 79/121 (65%), Positives = 102/121 (84%)
Frame = +3
Query: 285 QTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWE 464
Q++ D + +D WK+ LK+PP+D R +T DVT T+GNEFE++ LKR+LL GI+EKG+E
Sbjct: 118 QSEAISDSNNED--WKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFE 175
Query: 465 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
KPSPIQE SIPIAL+G D+LARAKNGTGKTGA+CIP LE++DP+ + IQA+I+VPTRELA
Sbjct: 176 KPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELA 235
Query: 645 L 647
L
Sbjct: 236 L 236
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 172 bits (419), Expect = 1e-43
Identities = 80/141 (56%), Positives = 107/141 (75%), Gaps = 3/141 (2%)
Frame = +3
Query: 234 MTENRISSSNHVGNSISQTKGEVDKSIDDVG---WKSKLKIPPKDRRIKTSDVTDTRGNE 404
+ +I N G+++ + + V + D WK++LK+P D R +T DVT T+GNE
Sbjct: 73 LRRGQIPGGNSNGDAVVEVEKTVQSEVIDPNSEDWKARLKLPAPDTRYRTEDVTATKGNE 132
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
FE++ LKRELLMGI+EKG+E+PSPIQE SIPIAL+G+D+LARAKNGTGKT A+CIPVLE+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 585 VDPKKDTIQALIVVPTRELAL 647
+D + IQA+I+VPTRELAL
Sbjct: 193 IDQDNNVIQAVIIVPTRELAL 213
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 172 bits (419), Expect = 1e-43
Identities = 80/141 (56%), Positives = 107/141 (75%), Gaps = 3/141 (2%)
Frame = +3
Query: 234 MTENRISSSNHVGNSISQTKGEVDKSIDDVG---WKSKLKIPPKDRRIKTSDVTDTRGNE 404
+ +I N G+++ + + V + D WK++LK+P D R +T DVT T+GNE
Sbjct: 73 LRRGQIPGGNSNGDAVVEVEKTVQSEVIDPNSEDWKARLKLPAPDTRYRTEDVTATKGNE 132
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
FE++ LKRELLMGI+EKG+E+PSPIQE SIPIAL+G+D+LARAKNGTGKT A+CIPVLE+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 585 VDPKKDTIQALIVVPTRELAL 647
+D + IQA+I+VPTRELAL
Sbjct: 193 IDQDNNVIQAVIIVPTRELAL 213
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/80 (45%), Positives = 55/80 (68%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F + +K ++L G++E G+EKPS IQ+ ++ L G+DV+A+A++GTGKT + V +
Sbjct: 37 FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQV 96
Query: 585 VDPKKDTIQALIVVPTRELA 644
VD +QALI+ PTRELA
Sbjct: 97 VDTSSREVQALILSPTRELA 116
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 78.6 bits (185), Expect = 3e-15
Identities = 45/116 (38%), Positives = 67/116 (57%), Gaps = 6/116 (5%)
Frame = +3
Query: 312 IDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEAS 491
+D+V +++ DR + + FEE L L+ + +KG EKP+ IQ+++
Sbjct: 17 VDEVEKAEEVEEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSA 76
Query: 492 IPIALSGKDVLARAKNGTGKTGAYCIPVLEQ------VDPKKDTIQALIVVPTREL 641
IP L GKDV+ARAK G+GKT AY +P+L++ V KK A I+VP+REL
Sbjct: 77 IPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSREL 132
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 77.8 bits (183), Expect = 6e-15
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F +F LK ELL I + G+E PS +Q IP A+ G DV+ +AK+G GKT + + L+Q
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 585 VDPKKDTIQALIVVPTRELA 644
++P + AL++ TRELA
Sbjct: 108 IEPSPGQVSALVLCHTRELA 127
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 77.8 bits (183), Expect = 6e-15
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F +F LK ELL I + G+E PS +Q IP A+ G DV+ +AK+G GKT + + L+Q
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 585 VDPKKDTIQALIVVPTRELA 644
++P + AL++ TRELA
Sbjct: 108 IEPSPGQVSALVLCHTRELA 127
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 76.6 bits (180), Expect = 1e-14
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 11/155 (7%)
Frame = +3
Query: 213 RDKFGKMMTENRISSSNHV-GNSISQTKGEVDKS-IDDVGWKSKLKIPPKDRRI-KTSDV 383
R K K +T + S V N+ S +G KS +D+ K P +I KTSD
Sbjct: 16 RAKLVKKLTSDEDGSGKLVKDNNKSLKRGREGKSDVDEPLIKKPASTTPLVTQIAKTSDS 75
Query: 384 TDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAY 563
++ F++F L L GI + G++ + +QEA++P+ L GKD+LA+AK GTGKT A+
Sbjct: 76 YLSK-TRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAF 134
Query: 564 CIPVLEQV--------DPKKDTIQALIVVPTRELA 644
+P +E V D + I L+V PTRELA
Sbjct: 135 LLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELA 169
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 76.6 bits (180), Expect = 1e-14
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
Frame = +3
Query: 351 PKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLAR 530
P +KTSD ++ F++F L L I + G+E + +QEA++PI L GKDVLA+
Sbjct: 367 PTGEHVKTSDSYLSK-TRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAK 425
Query: 531 AKNGTGKTGAYCIPVLEQV--------DPKKDTIQALIVVPTRELA 644
AK GTGKT A+ +P +E V D ++ I L+V PTRELA
Sbjct: 426 AKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELA 471
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 74.9 bits (176), Expect = 4e-14
Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
Frame = +3
Query: 354 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 533
K R S +T TR F+ + L L I + G+E + +QEA++PI L GKDVLA+A
Sbjct: 42 KTRNANDSYLTKTR---FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKA 98
Query: 534 KNGTGKTGAYCIPVLEQV--------DPKKDTIQALIVVPTRELA 644
K GTGKT A+ +P +E V D K+ I AL++ PTRELA
Sbjct: 99 KTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELA 143
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 74.1 bits (174), Expect = 7e-14
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F+ L+ LL GI+ G+EKPS IQ+ I G DV+ +A++GTGKT +C VL+Q
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 585 VDPKKDTIQALIVVPTRELA 644
+D QAL++ PTRELA
Sbjct: 101 LDFSLIQCQALVLAPTRELA 120
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 74.1 bits (174), Expect = 7e-14
Identities = 37/82 (45%), Positives = 53/82 (64%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 578
+ F+ L+ +LL GI+ G+EKPS IQ+ I G DV+ +A++GTGKT +C VL
Sbjct: 41 DSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVL 100
Query: 579 EQVDPKKDTIQALIVVPTRELA 644
+Q+D QAL++ PTRELA
Sbjct: 101 QQLDISLVQCQALVLAPTRELA 122
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Frame = +3
Query: 372 TSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGK 551
T D + F E L R LL G++KP+PIQ A IP+AL+G+D+ A A G+GK
Sbjct: 158 TVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGK 217
Query: 552 TGAYCIPVLEQV--DPKK-DTIQALIVVPTRELAL 647
T A+ +P LE++ PK+ + LI+ PTRELA+
Sbjct: 218 TAAFALPTLERLLFRPKRVFATRVLILTPTRELAV 252
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 73.7 bits (173), Expect = 1e-13
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F+ L+ LL GI+ G+EKPS IQ+ I G DV+ +A++GTGKT +C VL+Q
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 585 VDPKKDTIQALIVVPTRELA 644
+D QAL++ PTRELA
Sbjct: 101 LDYALLQCQALVLAPTRELA 120
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Frame = +3
Query: 351 PKDRRIK---TSDVTDTRGNEFEEFCLKRELLMGIF-EKGWEKPSPIQEASIPIALSG-- 512
P+D IK + D T + FE+ L EL+ G++ E +EKPS IQ S+P+ ++
Sbjct: 72 PEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPH 131
Query: 513 KDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
K ++A+A NG+GKT + + +L +VDP QAL + PTRELA
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELA 175
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/82 (42%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
FE L + I +KG++ P+PIQ ++P+ LSG DV+A A+ G+GKT A+ IP+LE+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 585 VDP--KKDTIQALIVVPTRELA 644
+ + ++ALI+ PTR+LA
Sbjct: 90 LKQHVPQGGVRALILSPTRDLA 111
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/80 (37%), Positives = 54/80 (67%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F++ + ++L G+++ G++KPS IQ+ ++ L G+DV+A+A++GTGKT I V +
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83
Query: 585 VDPKKDTIQALIVVPTRELA 644
V+ +Q L++ P+RELA
Sbjct: 84 VNISSRKVQVLVLSPSRELA 103
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 67.7 bits (158), Expect = 6e-12
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F E ++ EL+ GW+ PS IQ ++P AL GKDV+ A+ G+GKTGA+ IP+L+
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 585 V-------DPKK-----DTIQALIVVPTRELAL 647
+ +PKK A ++ PTRELA+
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +3
Query: 390 TRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCI 569
T FE L + E G KP+P+Q +P L+G+DVL A+ G+GKT A+ +
Sbjct: 55 TSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFAL 114
Query: 570 PVLEQVDPKKDTIQALIVVPTRELA 644
P+L ++ + AL+V PTRELA
Sbjct: 115 PILHRLAEDPYGVFALVVTPTRELA 139
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 64.1 bits (149), Expect = 8e-11
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 8/88 (9%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL-- 578
+EE L ELL + G++KPSPIQ A+IP+ L +DV+ A+ G+GKT A+ +P+L
Sbjct: 315 WEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAY 374
Query: 579 -EQVDPKKDTIQ-----ALIVVPTRELA 644
++ P + + A+++ PTRELA
Sbjct: 375 ISRLPPMSEENETEGPYAVVMAPTRELA 402
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 63.7 bits (148), Expect = 1e-10
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +3
Query: 432 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD-PKKDTI 608
+L + E G+++P+PIQ +IPI LSG++ A A G+GKT A+ P+L ++ P D I
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 609 QALIVVPTRELA 644
+A+I+ P RELA
Sbjct: 212 RAVILSPARELA 223
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Frame = +3
Query: 456 GWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDTIQ---AL 617
G+E P+ +Q +IP+ LSG+DVL A GTGKT AY P++ + PK D AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 618 IVVPTRELAL 647
++VPTREL L
Sbjct: 109 VIVPTRELCL 118
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 61.3 bits (142), Expect = 5e-10
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Frame = +3
Query: 357 DRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAK 536
+RR+ S+ G E + E++ + KG EK PIQ+A + A+ G+D++ RA+
Sbjct: 90 ERRVGDSESVGGDGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRAR 149
Query: 537 NGTGKTGAYCIPVLEQV------DPKKDTIQALIVVPTRELA 644
GTGKT A+ IP+++++ + L++ PTRELA
Sbjct: 150 TGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELA 191
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 61.3 bits (142), Expect = 5e-10
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP---- 572
FE+ +++ I ++ +EKP+ IQ ++PI LSG+DV+ AK G+GKT A+ +P
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 573 VLEQVDPKKDTIQ-ALIVVPTRELA 644
+++Q + ++D +I PTRELA
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELA 314
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 60.9 bits (141), Expect = 7e-10
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Frame = +3
Query: 366 IKTSDVTDTRGN-EFEEFC---LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 533
I+++ VT+T + C + +L + E G+ P+ IQ ++P +G+D + A
Sbjct: 61 IESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHA 120
Query: 534 KNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELAL 647
+ G+GKT Y + + ++P++ ++QA+IVVPTREL +
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGM 158
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 13/94 (13%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
FEE L LL + +G+ P+ +Q A++P + G D + ++ G+GKT AY +P+L +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 585 VDP-------------KKDTIQALIVVPTRELAL 647
+ P K+ IQA+IV P+REL +
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGM 205
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 59.3 bits (137), Expect = 2e-09
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Frame = +3
Query: 354 KDRRIKTS-DVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLAR 530
+D I+TS D N F E L L + I + KP+P+Q +IPI L G+D++A
Sbjct: 143 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMAC 202
Query: 531 AKNGTGKTGAYCIPVLEQVDPKKDTIQ-----------ALIVVPTRELA 644
A+ G+GKT A+C P++ + K +Q A+I+ PTRELA
Sbjct: 203 AQTGSGKTAAFCFPIISGI-MKDQHVQRPRGSRTVYPLAVILSPTRELA 250
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
FE L E+L + G+ P+PIQ + PIAL +D++A AK G+GKT Y IP
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496
Query: 585 V----DPKKDTIQALIVVPTRELA 644
+ + ++ LI+ PTRELA
Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELA 520
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.0 bits (134), Expect = 5e-09
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP-VLE 581
FE ELL + G+ P+PIQ S PIA+ G+D++A AK G+GKT Y IP L
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
Query: 582 QVDPKKDTIQA---LIVVPTRELA 644
+ D+ L++ PTRELA
Sbjct: 220 LQRIRNDSRMGPTILVLSPTRELA 243
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.0 bits (134), Expect = 5e-09
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP-VLE 581
FE ELL + G+ P+PIQ S PIA+ G+D++A AK G+GKT Y IP L
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
Query: 582 QVDPKKDTIQA---LIVVPTRELA 644
+ D+ L++ PTRELA
Sbjct: 220 LQRIRNDSRMGPTILVLSPTRELA 243
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 58.0 bits (134), Expect = 5e-09
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP-VLE 581
FE ELL + G+ P+PIQ S PIA+ G+D++A AK G+GKT Y IP L
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
Query: 582 QVDPKKDTIQA---LIVVPTRELA 644
+ D+ L++ PTRELA
Sbjct: 220 LQRIRNDSRMGPTILVLSPTRELA 243
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 57.2 bits (132), Expect = 9e-09
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Frame = +3
Query: 342 KIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDV 521
++ K+ K + + FE L I E G+ + + IQ +IP + G+DV
Sbjct: 135 EVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDV 194
Query: 522 LARAKNGTGKTGAYCIPVLE-----QVDPKKDTIQALIVVPTRELAL 647
L A+ G+GKT A+ IP +E + P+ T L++ PTRELA+
Sbjct: 195 LGAARTGSGKTLAFLIPAVELLYRVKFTPRNGT-GVLVICPTRELAI 240
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Frame = +3
Query: 402 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 581
+F + + + G+ + + + +Q A+IP AL G+D+L A+ G+GKT A+ IP+LE
Sbjct: 72 KFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILE 131
Query: 582 QVDPKK----DTIQALIVVPTRELA 644
++ ++ D + +I+ PTRELA
Sbjct: 132 KLHRERWSPEDGVGCIIISPTRELA 156
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 56.8 bits (131), Expect = 1e-08
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Frame = +3
Query: 354 KDRRIKTS-DVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLAR 530
+D I+TS D N F E L L + I + KP+P+Q +IPI +G+D++A
Sbjct: 130 EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMAC 189
Query: 531 AKNGTGKTGAYCIPVLEQVDPKKDTIQ-----------ALIVVPTRELA 644
A+ G+GKT A+C P++ + K I+ A+I+ PTRELA
Sbjct: 190 AQTGSGKTAAFCFPIISGI-MKDQHIERPRGVRGVYPLAVILSPTRELA 237
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F++ +L I + G+ +P+PIQ P+AL G+D++ A+ G+GKT AY +P L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 585 VDP-----KKDTIQALIVVPTRELAL 647
V + D LI+ PTRELA+
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAV 252
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F++ +L I + G+ +P+PIQ P+AL G+D++ A+ G+GKT AY +P L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 585 VDP-----KKDTIQALIVVPTRELAL 647
V + D LI+ PTRELA+
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAV 252
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL------- 578
L +LL+ + G++ P+PIQ +IP AL+GK +LA A G+GKT ++ +P++
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYH 176
Query: 579 -EQVDPKKDTIQALIVVPTRELAL 647
E ++ A+++ PTREL +
Sbjct: 177 SEHPSDQRRNPLAMVLAPTRELCV 200
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Frame = +3
Query: 429 ELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV------D 590
E++ + +G EK PIQ+A + A+ G+D++ RA+ GTGKT A+ IP+++++
Sbjct: 126 EIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKH 185
Query: 591 PKKDTIQALIVVPTRELA 644
+ Q L++ PTRELA
Sbjct: 186 GRGKNPQCLVLAPTRELA 203
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 54.8 bits (126), Expect = 5e-08
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL-- 578
F+ L + + I E G++ + IQ SI L GKDVL A+ G+GKT A+ IP +
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVEL 150
Query: 579 ---EQVDPKKDTIQALIVVPTRELAL 647
E+ P+ T +++ PTRELA+
Sbjct: 151 LFKERFSPRNGT-GVIVICPTRELAI 175
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 54.4 bits (125), Expect = 6e-08
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Frame = +3
Query: 381 VTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGA 560
+T+TR ++ E L +++ + + +E +P+Q A+IP+ S KDV A G+GKT A
Sbjct: 11 LTETRFSDLEP-PLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLA 69
Query: 561 YCIPVLE------QVDPKKDTIQALIVVPTRELA 644
+ +P++E PK + +I+ PTREL+
Sbjct: 70 FVVPLVEILRRSTSFPPKPHQVMGVIISPTRELS 103
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 54.4 bits (125), Expect = 6e-08
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F+E C+ L + G K + +Q+A++ L GKD L +AK GTGK+ A+ +P +E
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 585 V---------DPKKDTIQALIVVPTRELA 644
V K I ALI+ PTRELA
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELA 418
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 599
L ++L + + +EKP PIQ ++PI +SG+D + AK G+GKT + +P+L + +
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Query: 600 -----DTIQALIVVPTREL 641
D L++ PTREL
Sbjct: 463 PVEAGDGPIGLVMAPTREL 481
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 53.2 bits (122), Expect = 1e-07
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F+E C+ L + G K + +Q+A++ L GKD L +AK GTGK+ A+ +P +E
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 585 V---------DPKKDTIQALIVVPTRELA 644
V K I LI+ PTRELA
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELA 465
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 599
L ++L + + +EKP PIQ ++PI +SG+D + AK G+GKT + +P+L + +
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Query: 600 -----DTIQALIVVPTREL 641
D L++ PTREL
Sbjct: 596 PVEAGDGPIGLVMAPTREL 614
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Frame = +3
Query: 444 IFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIP---VLEQV-DPKKDTIQ 611
++ G+ PSPIQ S PIA+ +D++A AK G+GKT Y IP L+++ + +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPT 303
Query: 612 ALIVVPTRELA 644
L++ PTRELA
Sbjct: 304 ILVLSPTRELA 314
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV---- 587
L +++ + G+E +P+Q +IP S KDV+ A G+GKT A+ +P +E +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 588 --DPKKDTIQALIVVPTRELA 644
PK + +I+ PTREL+
Sbjct: 83 SYPPKPHQVMGVIISPTRELS 103
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV---- 587
L +++ + G+E +P+Q +IP S KDV+ A G+GKT A+ +P +E +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 588 --DPKKDTIQALIVVPTRELA 644
PK + +I+ PTREL+
Sbjct: 84 SYPPKPHQVMGVIISPTRELS 104
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 52.0 bits (119), Expect = 3e-07
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 15/148 (10%)
Frame = +3
Query: 246 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLK 425
RI SS+ + S T V + + +KS L + D D + ++ EE +
Sbjct: 50 RIHSSSLLVPSAVATPNSV---LSEEAFKS-LGLSDHDEYDLDGDNNNVEADDGEELAIS 105
Query: 426 RELLMGIFEKGWEKPS-----PIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD 590
+ L E+ EK PIQ A + AL G+D++ARAK GTGKT A+ IP+++++
Sbjct: 106 KLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLT 165
Query: 591 PKKDTIQA----------LIVVPTRELA 644
+ A L++ PTRELA
Sbjct: 166 EEAGDYTAFRRSGRLPKFLVLAPTRELA 193
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 578
N F + L L + I + +P+P+Q +IPI L+ +D++A A+ G+GKT A+C P++
Sbjct: 151 NTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
Query: 579 EQVDPKKDTIQ----------ALIVVPTRELA 644
+ + + A+I+ PTRELA
Sbjct: 211 SGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 10/92 (10%)
Frame = +3
Query: 399 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 578
N F + L L + I + +P+P+Q +IPI L+ +D++A A+ G+GKT A+C P++
Sbjct: 151 NTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
Query: 579 EQVDPKKDTIQ----------ALIVVPTRELA 644
+ + + A+I+ PTRELA
Sbjct: 211 SGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 52.0 bits (119), Expect = 3e-07
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Frame = +3
Query: 453 KGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV---------DPKKDT 605
K +EKPSPIQ + P L G+D++ AK G+GKT A+ IP + V KK
Sbjct: 132 KTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191
Query: 606 IQALIVVPTRELAL 647
L++ PTRELA+
Sbjct: 192 PTCLVLSPTRELAV 205
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Frame = +3
Query: 432 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK---- 599
+L + + G+ +P+PIQ P+A+ G+D++ A+ G+GKT +Y +P + V+ +
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 600 -DTIQALIVVPTRELAL 647
D L++ PTRELA+
Sbjct: 170 GDGPIVLVLAPTRELAV 186
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Frame = +3
Query: 333 SKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG 512
S+ K K ++ DV N +F + L + G E PIQ ++ + L G
Sbjct: 74 SEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDG 133
Query: 513 KDVLARAKNGTGKTGAYCIPVLEQV--DPKKD--------TIQALIVVPTRELA 644
D++ RA+ G GKT A+ +P+LE + P K + L+++PTRELA
Sbjct: 134 ADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELA 187
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +3
Query: 420 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQV 587
L + + + + G+++PS Q IP LSGKDV+ A+ G+GKT Y P+++Q+
Sbjct: 87 LSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQL 142
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL-- 578
F++ R +L + EKG +P+PIQ +P+ L+G+D++ A G+GKT + +P++
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 579 ----EQVDP--KKDTIQALIVVPTRELA 644
E + P + LIV P+RELA
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIVCPSRELA 235
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 516 DVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 644
DV+ +AK+G GKT + + L+Q++P + AL++ TRELA
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELA 44
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Frame = +3
Query: 432 LLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL------EQVDP 593
LL + +KG P+PIQ +P+ LSG+D++ A G+GKT + +P++ E + P
Sbjct: 108 LLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMP 167
Query: 594 --KKDTIQALIVVPTRELA 644
+ AL++ P+RELA
Sbjct: 168 IAAGEGPIALVICPSRELA 186
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 LLMGIFEKGWEKPSPIQEASIPIAL-SGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTI 608
L+ I+ +++P+ IQ+A +A GKDV+ A+ G+GKT A+ +P+L+++ +++ +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 609 QALIVVPTRE 638
L + E
Sbjct: 261 GKLYALKGEE 270
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.0 bits (99), Expect = 9e-05
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Frame = +3
Query: 363 RIKTSDVTDT---RGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 533
R KT D +T F E +++ + E+ +++P+ IQ + + GK +
Sbjct: 359 RNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIAD 418
Query: 534 KNGTGKTGAYCIPVLEQVDPKK---------DTIQALIVVPTRELA 644
++G+GKT AY +PV++++ ++ + +++VPT ELA
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELA 464
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Frame = +3
Query: 405 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 584
F+E L E++ + E E P+ IQ IP + K V+ + G+GKT AY +P+++
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173
Query: 585 VDPKKDTI---------QALIVVPTRELA 644
+ + + + +++ PTREL+
Sbjct: 174 MREDEANLGKKTKPRRPRTVVLCPTRELS 202
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
Frame = +3
Query: 489 SIPIALSGKDVLARAKNGTGKTGAYCIPVL--------EQVDPKKDTIQALIVVPTRELA 644
+IP AL+GK +LA A G+GKT ++ +P++ E ++ A+++ PTREL
Sbjct: 3 AIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELC 62
Query: 645 L 647
+
Sbjct: 63 V 63
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Frame = +3
Query: 417 CLKRELLMGIFEKGWEKPSPIQEA--SIPIALSG--KDVLARAKNGTGKTGAYCIPVLEQ 584
CL +L + G P+Q A I G +D+ + G+GKT +Y +P+++
Sbjct: 27 CLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQL 86
Query: 585 VDPKK-DTIQALIVVPTRELAL 647
+ + ++AL+V+PTR+LAL
Sbjct: 87 LASRPVRCLRALVVLPTRDLAL 108
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 480 QEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQ-ALIVVPTRELA 644
Q +I AL+GK+V +GK+ Y +PV E++ KDT AL + PT+ LA
Sbjct: 398 QAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEEL--CKDTNSCALYLFPTKALA 451
>At4g14385.2 68417.m02217 expressed protein
Length = 156
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 249 ISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNE 404
+ S+H+GN++ +G + S K K P+DR S VT E
Sbjct: 44 LQESSHIGNALKGFEGFLSSSKSTASAKRSRKFQPEDRVFSLSSVTSPAAEE 95
>At4g14385.1 68417.m02216 expressed protein
Length = 163
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 249 ISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNE 404
+ S+H+GN++ +G + S K K P+DR S VT E
Sbjct: 44 LQESSHIGNALKGFEGFLSSSKSTASAKRSRKFQPEDRVFSLSSVTSPAAEE 95
>At4g14385.3 68417.m02218 expressed protein
Length = 129
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 249 ISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVT 386
+ S+H+GN++ +G + S K K P+DR S VT
Sbjct: 44 LQESSHIGNALKGFEGFLSSSKSTASAKRSRKFQPEDRVFSLSSVT 89
>At1g56230.1 68414.m06464 expressed protein
Length = 752
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 351 PKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQ-EASIPIALSGKDVLA 527
P++ R T V D G E F ++ + G+F++G E PSP++ E I G +
Sbjct: 475 PQEGRWLTRTVLDHAGREC--FVIRIRVGKGVFKRGGEVPSPVKSEERITEVRVGS--WS 530
Query: 528 RAKNGTGKTGAYCIPVLEQVDPKKD 602
+ GK A + + +P +D
Sbjct: 531 YVEGSIGKAPAKVVGTVTPKEPMED 555
>At1g63530.1 68414.m07182 hypothetical protein
Length = 499
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 258 SNHVGNSISQTKGEVDKSIDDVGWK 332
S+H G +IS K VDKS D++ W+
Sbjct: 276 SSHEGQNISSFKPYVDKSHDELRWE 300
>At1g55915.1 68414.m06413 expressed protein similar to Hypothetical
30.6 kDa protein in ACT5-YCK1 intergenic region
(Swiss-Prot:P38838) [Saccharomyces cerevisiae]; similar
to Yhr134wp (GI:500671) [Saccharomyces cerevisiae]
Length = 404
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = +3
Query: 327 WKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSP---IQEASIP 497
W + PP + SDV D FE C KR G K P + ++SIP
Sbjct: 254 WSNAHSCPPSSSHQQGSDVIDLTEESFEIRCTKRNRSPGDQGPSCAKDVPNAGVMKSSIP 313
Query: 498 I 500
+
Sbjct: 314 L 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,255
Number of Sequences: 28952
Number of extensions: 210777
Number of successful extensions: 603
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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