Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_F04
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   135   2e-32
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   132   1e-31
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   129   1e-30
At1g56050.1 68414.m06436 GTP-binding protein-related similar to ...    29   2.0  
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.4  
At5g36210.1 68418.m04365 expressed protein                             27   6.0  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   7.9  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  135 bits (327), Expect = 2e-32
 Identities = 58/94 (61%), Positives = 77/94 (81%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKR 321
           AW H+YW+LTNEGI++LR +L+LP EIVPATLK+
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKK 94


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  132 bits (320), Expect = 1e-31
 Identities = 58/97 (59%), Positives = 78/97 (80%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 330
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  129 bits (312), Expect = 1e-30
 Identities = 57/97 (58%), Positives = 77/97 (79%)
 Frame = +1

Query: 40  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 219
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 220 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 330
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAK 96


>At1g56050.1 68414.m06436 GTP-binding protein-related similar to
           GTP-binding protein GI:10176676 from [Bacillus
           halodurans]
          Length = 421

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 392 PQQSGLGHQDDQXGPRRTVSVRTERLSVAGTISGGRCKNILK 267
           PQ +G+ H D + G  R  +V  E    AG+I+  R K +L+
Sbjct: 360 PQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGLLR 401


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 127 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 216
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 37  KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 135
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 132 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 46
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,199,049
Number of Sequences: 28952
Number of extensions: 219412
Number of successful extensions: 558
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)