Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_D18
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 227 5e-60
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 222 2e-58
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 222 2e-58
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.29
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.5
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 4.7
At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase, p... 27 8.1
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 27 8.1
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 8.1
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 227 bits (555), Expect = 5e-60
Identities = 104/163 (63%), Positives = 125/163 (76%)
Frame = +1
Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
LG K ME YV+KRR DG ++ NL +TWEKL +AAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQ 88
Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP+
Sbjct: 89 RAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPI 148
Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 639
IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG
Sbjct: 149 IAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 99 LALNEEDVTKMLAATTHLGAENVNFQ 176
L+ E DV M AA HLG +N N+Q
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQ 37
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 222 bits (542), Expect = 2e-58
Identities = 102/163 (62%), Positives = 123/163 (75%)
Frame = +1
Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
LG K ME YV+KRR DG ++INL +TW+KL +AAR +VAIENP D+ V S+RP+GQ
Sbjct: 30 LGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQ 89
Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
RAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP
Sbjct: 90 RAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPT 149
Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 639
IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG
Sbjct: 150 IAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 192
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 111 EEDVTKMLAATTHLGAENVNFQ 176
E D+ ML+A HLG +N N+Q
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQ 38
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 222 bits (542), Expect = 2e-58
Identities = 102/163 (62%), Positives = 123/163 (75%)
Frame = +1
Query: 151 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 330
LG K ME YV+KRR DG ++INL +TW+KL +AAR +VAIENP D+ V S+RP+GQ
Sbjct: 30 LGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQ 89
Query: 331 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 510
RAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E + NIP
Sbjct: 90 RAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPT 149
Query: 511 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 639
IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG
Sbjct: 150 IAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 192
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 111 EEDVTKMLAATTHLGAENVNFQ 176
E D+ ML+A HLG +N N+Q
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQ 38
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 433 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 582
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 388 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 489
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 216 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 338
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
>At5g58780.1 68418.m07362 dehydrodolichyl diphosphate synthase,
putative / DEDOL-PP synthase, putative similar to
GI:796076
Length = 302
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 142 PPILGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 276
P ILG +TS + Y ++R +GT+V+ + +L+ AV+
Sbjct: 33 PKILGFIKITSSRDDYDNEQRDEGTYVVGVEELQRELMPRHVAVI 77
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 430 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 582
+PR+ + P+ DH+ IT AS N PV L + +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 588 RVGRLGVAWDSNVHKS 541
R GR+G WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,028
Number of Sequences: 28952
Number of extensions: 355730
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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