Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C21
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 96 2e-20
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 95 5e-20
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 30 1.1
At5g02840.2 68418.m00227 myb family transcription factor contain... 29 2.0
At5g02840.1 68418.m00226 myb family transcription factor contain... 29 2.0
At1g01520.1 68414.m00068 myb family transcription factor similar... 29 2.0
At5g15890.1 68418.m01859 expressed protein 29 3.5
At2g28940.2 68415.m03518 protein kinase family protein contains ... 28 4.6
At2g28940.1 68415.m03517 protein kinase family protein contains ... 28 4.6
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 4.6
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 4.6
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 28 6.1
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 27 8.0
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 8.0
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 8.0
At1g02290.1 68414.m00171 expressed protein 27 8.0
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 95.9 bits (228), Expect = 2e-20
Identities = 51/119 (42%), Positives = 73/119 (61%)
Frame = +3
Query: 66 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 245
M F R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLTDI 58
Query: 246 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 422
+ +++ +A A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 94.7 bits (225), Expect = 5e-20
Identities = 50/119 (42%), Positives = 71/119 (59%)
Frame = +3
Query: 66 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 245
M F RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58
Query: 246 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 422
+ + + +A A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 59 VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
nodule inception protein [Lotus japonicus] GI:6448579;
contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 30.3 bits (65), Expect = 1.1
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Frame = +3
Query: 69 PFARYVEPGRVALVADGP--LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTK 242
P+ + P + L + P L ++ DV + R D GS R ++N + T+
Sbjct: 634 PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693
Query: 243 FRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWA----QKLANKE---------KRAQMTD 383
FRL P+R V A D+ + K + WA Q A+ K D
Sbjct: 694 FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWAHLTCQDTASPTILQHKLVSIKATYRED 751
Query: 384 YDRFKLTAARVKRNRARTAVFKSLKVKAA 470
RFK++ V + V K LK++ A
Sbjct: 752 IIRFKISPESVSITELKQQVAKRLKLETA 780
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 267 APTRLVRKAWTDAKLNEKWTESQ 335
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 267 APTRLVRKAWTDAKLNEKWTESQ 335
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 261 FTAPTRLVRKAWTDAKLNEKWTESQ 335
F PT+ VRK +T K E WTE +
Sbjct: 44 FEDPTKKVRKPYTITKSRENWTEQE 68
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 190 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 92
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At2g28940.2 68415.m03518 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 462
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 121 GPSATRATRPGSTYRAKGMTFLQRLNTNNVLSKKNFR 11
G S + GS+YR K + ++N N LSK ++R
Sbjct: 416 GESEPELKKQGSSYRKKVLDLRDKMNLNKSLSKLDWR 452
>At2g28940.1 68415.m03517 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 343
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 121 GPSATRATRPGSTYRAKGMTFLQRLNTNNVLSKKNFR 11
G S + GS+YR K + ++N N LSK ++R
Sbjct: 297 GESEPELKKQGSSYRKKVLDLRDKMNLNKSLSKLDWR 333
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 84 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 236
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +3
Query: 258 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 437
AF VRK + + + ++++ E+RA+ T + + + T + +
Sbjct: 692 AFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEV 750
Query: 438 AVFKSLKVKAARAGTFGKKNI 500
FK+LK + A +F KKN+
Sbjct: 751 ECFKALKRQEEMAASFRKKNL 771
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 216 RLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRF 395
R + +H K RL+ A PT + D L + S + +E A + DY RF
Sbjct: 64 RSDNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSSSVRVGETGFREVAAYLLDYGRF 123
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 154 TSTTLTNFPFKGPSATRATRPGSTYRAKGMTFLQRLNTNN 35
T+ T T PS+ A + + ++ +FLQR N NN
Sbjct: 69 TANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNN 108
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 84 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 236
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 84 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 236
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 185 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYSSREESV 295
T Q S T+P+ P+H +P +RV S YS E+++
Sbjct: 326 TTQRSIQGTEPVFHDPTHTVPSALRV-SNYSITEQNI 361
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,375
Number of Sequences: 28952
Number of extensions: 270368
Number of successful extensions: 777
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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