Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_C19
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    31   0.77 
At3g03305.1 68416.m00328 calcineurin-like phosphoesterase family...    29   2.4  

>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 172 RNKKCFINLSNIPNKPKKVVNSFFCLCKILFKTV 273
           +NKK   N+   PNKPKK  +S+F  CK   K+V
Sbjct: 359 KNKKKNENVD--PNKPKKPTSSYFLFCKDARKSV 390


>At3g03305.1 68416.m00328 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 743

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 2   HLRXILKNLFVNLSSFSYICPHLHERKCCSLK 97
           H +  LK++F+  S  +Y+C HLH R   +LK
Sbjct: 253 HSQKSLKDVFLKHSISAYLCGHLHSRFGKNLK 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,135,452
Number of Sequences: 28952
Number of extensions: 173603
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)