Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_C11
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26890.2 68416.m03365 expressed protein 33 0.17
At3g26890.1 68416.m03364 expressed protein 33 0.17
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 31 0.67
At2g35490.1 68415.m04347 plastid-lipid associated protein PAP, p... 31 0.67
At5g42050.1 68418.m05119 expressed protein similar to gda-1 [Pis... 30 1.5
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 30 1.5
At5g62110.1 68418.m07796 hypothetical protein 29 2.0
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 29 2.0
At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family... 29 2.7
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 28 4.7
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 28 4.7
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 28 4.7
At3g04470.1 68416.m00474 expressed protein 28 4.7
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 28 6.2
At3g43580.1 68416.m04635 expressed protein 28 6.2
At2g22795.1 68415.m02704 expressed protein 28 6.2
At5g26020.1 68418.m03096 hypothetical protein 27 8.2
At3g42254.1 68416.m04357 hypothetical protein 27 8.2
At2g19320.1 68415.m02254 expressed protein 27 8.2
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 27 8.2
At1g06180.1 68414.m00650 myb family transcription factor identic... 27 8.2
>At3g26890.2 68416.m03365 expressed protein
Length = 649
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 437 PTSDSIEKSTVEST-LQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDS 613
PTS++ +++T ++T L+KENS +K +D + D E + KPSK
Sbjct: 507 PTSEATQENTRKATSLEKENSKHGDKESCEGSDSVDSVEGDVLHESGKICLKPSKECNGG 566
Query: 614 STWGEYASYITY 649
S YA ++ +
Sbjct: 567 SGALRYALHLRF 578
>At3g26890.1 68416.m03364 expressed protein
Length = 649
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 437 PTSDSIEKSTVEST-LQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDS 613
PTS++ +++T ++T L+KENS +K +D + D E + KPSK
Sbjct: 507 PTSEATQENTRKATSLEKENSKHGDKESCEGSDSVDSVEGDVLHESGKICLKPSKECNGG 566
Query: 614 STWGEYASYITY 649
S YA ++ +
Sbjct: 567 SGALRYALHLRF 578
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 452 IEKSTVESTLQKENSSQTEKT--VLNITDDKGENDKDNTLEDNEKTK 586
+ KS+V+ T + E S TE T V+ D +K+N DNE K
Sbjct: 965 VGKSSVKKTKKSEKGSGTEATDTVMKDVGDNSAKEKENIAVDNESRK 1011
>At2g35490.1 68415.m04347 plastid-lipid associated protein PAP,
putative similar to plastid-lipid associated protein
PAP3 [Brassica rapa] GI:14248552; contains Pfam profile
PF04755: PAP_fibrillin
Length = 376
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 461 STVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGE 628
S + S+L E+ S+++ +TD+ GE D D++ ITD WGE
Sbjct: 50 SKIRSSLPSESESESDLDASAVTDEWGEKPGDANEPDSQPDNVTVNVITDE--WGE 103
>At5g42050.1 68418.m05119 expressed protein similar to gda-1 [Pisum
sativum] GI:2765418
Length = 349
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 485 KENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEY 631
++ + K N + + E+DK+N L+ KT P++++ + T G Y
Sbjct: 171 QKGGKKNRKNQQNNNNQRNEDDKNNGLDKRFKTLPPAEALPRNETIGGY 219
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 467 VESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTK--KPSKSITDSST 619
V+ ++++N ++K +D G ++KDN + +K K KS+ S T
Sbjct: 295 VQELMRRQNVEDSDKNTSKENEDSGNSNKDNASKSKKKGSWFKSIKSVASSMT 347
>At5g62110.1 68418.m07796 hypothetical protein
Length = 691
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 340 NQIEDTTSVEDINNDKIQNVQDVKTTSQTLECT 438
N+I T SVEDINN I NV+ + + +TL T
Sbjct: 410 NEILTTYSVEDINNLSINNVK-LNSNGETLNST 441
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 431 NVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTK 586
N+P + K + + E Q+ V+++TD + NDK T D TK
Sbjct: 355 NMPRDYLVSKERYDISSGSEEREQSVSEVIDVTDTESSNDKKWTSSDFPWTK 406
>At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family
protein contains Pfam profile PF04000: Sas10/Utp3
family; contains Prosite PS00761: Signal peptidases I
signature 3; weak similarity to PEBP2 beta-binding
protein / charged amino acid rich leucine zipper
factor-1 (GI:12061569) [Mus musculus]
Length = 654
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 446 DSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEK 580
DS E S E T++ E S + ++ +ITD K + DKD +E+ +K
Sbjct: 175 DSEEDSDRELTME-EISDKGKQATKSITDKKEKGDKDTHVEEIKK 218
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 443 SDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKK--PSKSITD 610
S S+ K V+ +K + + ++ + T D E+ K LE NE++K+ PSK TD
Sbjct: 321 SISVGKKPVDGEEKKHDLEKGDELMTETTPD--ESKKQAELEQNEESKQPLPSKITTD 376
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 443 SDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKK--PSKSITD 610
S S+ K V+ +K + + ++ + T D E+ K LE NE++K+ PSK TD
Sbjct: 380 SISVGKKPVDGEEKKHDLEKGDELMTETTPD--ESKKQAELEQNEESKQPLPSKITTD 435
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 455 EKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSK 598
E+ E +K+ ++TE V ++K +N K E+ E T+ P+K
Sbjct: 473 EEEPSEKKKKKKAEAETEAVVEVAKEEKKKNKKKRKHEEEETTETPAK 520
>At3g04470.1 68416.m00474 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 443 SDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKT 583
SD+IE E T Q+EN + +K + KG N +D L+ K+
Sbjct: 144 SDAIEDEECEVTDQQENGALKDKKGWFGWNKKGSNTEDTKLKKGSKS 190
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 437 PTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLED--NEKTKKPSK 598
P + + + EST +++SS T+++ + + +K E+D+ +ED EK ++ SK
Sbjct: 296 PADEHVVERKEESTSSEDSSSPTDESQNDGSAEKEESDEVKKVEDFVTEKKEELSK 351
>At3g43580.1 68416.m04635 expressed protein
Length = 204
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 230 AFITLERYNFRCRMCTVKCLEILHDIQHLMMTI*LWLSVLQV 105
A ++L ++F C M CL +L D+ + + +L+ L V
Sbjct: 139 AKVSLTHHDFACDMLRSSCLRVLMDLSPMFNALSTFLATLDV 180
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 458 KSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLE-----DNEKTKKPSKSITDSSTW 622
K + T +KE SS EKT T+ K +N++ ++ E +NEK +K S + S
Sbjct: 502 KEKEDETKEKEESSSQEKTEEKETETK-DNEESSSQEETKDKENEKIEKEEASSQEESKE 560
Query: 623 GE 628
E
Sbjct: 561 NE 562
>At5g26020.1 68418.m03096 hypothetical protein
Length = 241
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 530 DDKGENDKDNTL--EDNEKTKKPSKSITDSSTW 622
DD G+N D+ EDN K+ KP+K S W
Sbjct: 173 DDYGDNGADDVDDDEDNGKSSKPNKRRQYSKVW 205
>At3g42254.1 68416.m04357 hypothetical protein
Length = 104
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 554 DNTLEDNEKTKKPS-KSITDSSTWGEYAS 637
+ TLE E+ K P S T S+TW EY+S
Sbjct: 76 NQTLEHKEEKKTPVIHSTTHSTTWVEYSS 104
>At2g19320.1 68415.m02254 expressed protein
Length = 77
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +2
Query: 440 TSDSIEKSTVESTLQKENSSQTEKTVL-----NITDDKGENDKDNTLEDNEKTKKPSKSI 604
T + +EK + + E + T+ +I +D+G ND D +++ KP +
Sbjct: 4 TKERMEKDQKKRVVTNEAGKAEDNTIRTIIRESIVEDRGSNDDDGNKDNDHGASKPEDIL 63
Query: 605 TDSST 619
S T
Sbjct: 64 AFSRT 68
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 437 PTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPS 595
P DS + E+ ++N S L D + END +N EDNE K S
Sbjct: 116 PAKDS-QSGYKEAYHSEDNHSNDRSEKL---DSENENDNENEEEDNEMNKHQS 164
>At1g06180.1 68414.m00650 myb family transcription factor identical
to GB:CAA90748 GI:1263093 from [Arabidopsis
thaliana];contains PFAM profile:PF00249
Length = 246
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/61 (22%), Positives = 25/61 (40%)
Frame = +2
Query: 446 DSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWG 625
D + + E + S + + IT ND N+ +D+ + + +I D S W
Sbjct: 127 DFVSTTAAEMPTSPQQQSSSSADISAITTLGNNNDISNSNKDSATSSEDVLAIIDESFWS 186
Query: 626 E 628
E
Sbjct: 187 E 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,477,089
Number of Sequences: 28952
Number of extensions: 196463
Number of successful extensions: 676
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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