Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24f
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53420.1 68414.m06054 serine/threonine protein kinase-related...    30   1.5  
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa...    27   7.8  
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa...    27   7.8  

>At1g53420.1 68414.m06054 serine/threonine protein kinase-related
           contains 1 predicted transmembrane domain; low
           similarity to receptor-like serine/threonine kinase
           [Arabidopsis thaliana] GI:2465923
          Length = 953

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -2

Query: 290 TGNNYSLRIVYYIYLEFTTNITTLHKSFLKHQS*LKKIFKSLCPKCGSFS 141
           TG  ++L ++  I++ F    T   K +L+ +S ++K FKSL     SFS
Sbjct: 564 TGTLHTLVVILSIFIVFLVFGTLWKKGYLRSKSQMEKDFKSLELMIASFS 613


>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 642

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 602 IECRTPPPRDPRGSAARCVIPWLI--LSSPICTL 507
           + C++ PP +   +   CV PW +  LSSP  TL
Sbjct: 16  MRCKSNPPPEESLTCGTCVTPWHVSCLSSPPKTL 49


>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 645

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 602 IECRTPPPRDPRGSAARCVIPWLI--LSSPICTL 507
           + C++ PP +   +   CV PW +  LSSP  TL
Sbjct: 16  MRCKSNPPPEESLTCGTCVTPWHVSCLSSPPKTL 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,711
Number of Sequences: 28952
Number of extensions: 251224
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)