Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b15r
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15950.1 68417.m02421 expressed protein                             30   1.3  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    30   1.3  
At3g21410.1 68416.m02702 F-box family protein (FBW1) contains si...    28   5.3  
At5g06140.1 68418.m00683 phox (PX) domain-containing protein sim...    28   7.0  
At4g27300.1 68417.m03917 S-locus protein kinase, putative simila...    28   7.0  
At3g24900.1 68416.m03122 disease resistance family protein / LRR...    28   7.0  
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    28   7.0  
At2g33050.1 68415.m04053 leucine-rich repeat family protein cont...    28   7.0  

>At4g15950.1 68417.m02421 expressed protein
          Length = 160

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -2

Query: 346 PPPNWRPLCTRSVS*PARTDLADCASTTYPSLSKQNRSKSKTYRSLTPLTQLGKKIIFKK 167
           PP N++ L   S   P ++  A C  +  P+ S +N   S   + L     L  +++F  
Sbjct: 32  PPANYKILNVSSDQQPFQSSAAKCGKSDKPTKSSKNSLHSFELKDLMTEHWLMLRVVF-T 90

Query: 166 TNKSSLKGRTIVLLLYFLQ-HTFVYLTNS 83
           T   +L  +++ +LL  L+ H   ++++S
Sbjct: 91  TQTLNLSEKSLSILLAVLRLHWIRFVSHS 119


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
 Frame = -1

Query: 698 IRSLITFLVNKGITQLNEYPEQVELLRKIWFT-KYARHWTG--LCKCSCAFENV--FMAE 534
           I +L  + VN+ + Q+  +P+ V+ +RKI  T +  ++W G        ++E +    ++
Sbjct: 351 INALEVYQVNEFL-QIPTHPQDVDAMRKIKATYRVKKNWQGDPCVPVDYSWEGIDCIQSD 409

Query: 533 LKSN-EVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAPEVNM 357
             +N  V+ L+      + ++D   + L  I KLDLSG  L  +  + L+   +  E+N+
Sbjct: 410 NTTNPRVVSLNISFSELRGQIDPAFSNLTSIRKLDLSGNTLTGEIPAFLANLPNLTELNV 469


>At3g21410.1 68416.m02702 F-box family protein (FBW1) contains
           similarity to F-box domain IPR:001810;
          Length = 410

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -1

Query: 398 SVLSETKDAPEVNMFVGTSPELETA-LYTLCF-MTRPDRPCRLRFNNIPFTI 249
           S+L ++K+  +++++V    +   + L+T  F +TRPD P  L F N+ + +
Sbjct: 285 SLLHQSKETSKIDVWVTNKVKNGVSILWTKLFSVTRPDLPVLLAFENLSYPV 336


>At5g06140.1 68418.m00683 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 402

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 461 NYLGYID--KLDLSGKGLILKQHSVLSETKDAPEVNM 357
           +Y+ Y+   K  ++ +G   KQH  LSET    E+N+
Sbjct: 277 DYVRYVQSIKATIAERGTAFKQHCELSETTKLKEINL 313


>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 815

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 482 RELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAPEV 363
           R  DH  N LG++ K+ +  + + + +   L ET   PEV
Sbjct: 705 RHADHDLNLLGHVWKMWVEDREIEVPEEEWLEETSVIPEV 744


>At3g24900.1 68416.m03122 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 884

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 557 FENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSET 381
           FEN   + L  NE  GL    +    ++ +   Y   ++ +DL  KGL ++Q+ VLS +
Sbjct: 650 FENWKASSLTMNEDQGL----YMVYNKVVYGTYYFTSLEAIDLQYKGLSMEQNRVLSSS 704


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 379 KTRPK*TCLLAPPPNWRPLC 320
           +  P   C + PPP+W+P C
Sbjct: 131 RAEPYGICCVVPPPSWKPPC 150


>At2g33050.1 68415.m04053 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 800

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 473 DHKANYLGYIDKLDLSGKGLILKQHSVLS 387
           D+K  Y  Y D +DL  KGL ++Q  VL+
Sbjct: 564 DYKNAYYIYEDTMDLQYKGLFMEQGKVLT 592


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,998
Number of Sequences: 28952
Number of extensions: 302839
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)