Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b07f
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    33   0.12 
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo...    33   0.16 
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6...    29   3.5  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   3.5  
At5g54110.1 68418.m06737 vesicle-associated membrane family prot...    28   4.7  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    28   6.1  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   6.1  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   6.1  
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S...    27   8.1  

>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
 Frame = +1

Query: 454 DVSQYTPEEIVVKTVDNKLLV-----HAKHEEKSDT-KSVYR---EYNREFLLPKGTNPE 606
           D+     EE+ V+  D+ +L      H + EEK DT   V R   +++R+F LP+    +
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123

Query: 607 AIKSSLSRDGVLTV 648
            +K+S+  +GVLTV
Sbjct: 124 QVKASM-ENGVLTV 136


>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
           chloroplast precursor (HSP25.3-P) identical to small
           heat shock protein, chloroplast precursor SP:P31170 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 227

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +1

Query: 439 LKLRFDVSQYTPEEIVVKTVDNKLLV--HAKHEEKSDTKS--VYREYNREFLLPKGTNPE 606
           +K+RFD+   + E++ +   DN L++    K E+  D+ S      Y     LP     +
Sbjct: 138 IKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKD 197

Query: 607 AIKSSLSRDGVLTV 648
            IK+ L ++GVL +
Sbjct: 198 KIKAEL-KNGVLFI 210


>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
           HD-ZIP transcription factor 6 identical to
           homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
           ATHB-6) (SP:P46668) [Arabidopsis thaliana]
          Length = 311

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +1

Query: 190 DFSVIDTEFSSIRERFDAEMRKME---EEMSKFRSEL 291
           D+ V+ T++ S+R  FD+  R  E   +E+SK +++L
Sbjct: 122 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKL 158


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 425 VTARLSSFALMSASILPKRSLLR-LSTTNYWSMPNTRRNL 541
           VT+  S+   M  + LPKR L   L  TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354


>At5g54110.1 68418.m06737 vesicle-associated membrane family protein
           / VAMP family protein similar to VAP27 GI:6688926
           [Nicotiana plumbaginifolia]
          Length = 266

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 455 MSASILPKRSLLRLSTTNYWSMPNTRRNLIRN-LCTENTTGSFCCPREQILRPLS--LRC 625
           ++ S+LP R  LRL  ++Y   P      +R+ +  +NT+ S    + Q   P S  +R 
Sbjct: 66  VARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKSCYMRP 125

Query: 626 PGTVCLP 646
           PG V  P
Sbjct: 126 PGGVLAP 132


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +1

Query: 172 IPIKLGDFSVIDTEFSSIRERFDAEMRKMEEEMSKF 279
           IP++  D   +   F S+R   + +++ M++E +KF
Sbjct: 258 IPVRRTDDEPLQKLFMSVRSELNLDLKNMKQEQAKF 293


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 466 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 549
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 466 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 549
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649


>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
           SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
           discoideum}; contains Pfam profile PF01466: Skp1 family,
           dimerisation domain
          Length = 351

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 621 RRLNGLRICSLGQQKLPVVFSVH 553
           RRLN   + S+GQ++ PV FS++
Sbjct: 313 RRLNSSWVLSIGQERQPVNFSIN 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,426,007
Number of Sequences: 28952
Number of extensions: 239602
Number of successful extensions: 910
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)