Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a24r
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR...    30   1.4  
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa...    29   4.1  
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P...    28   5.5  
At3g13220.1 68416.m01654 ABC transporter family protein contains...    27   9.6  

>At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein. False intron
           created at intron 2 to escape a frameshift in the BAC
           sequence.
          Length = 1165

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 208 NFKRAETCKINFKICLQKTFIDKISKKNHIKISYL-VLNIKLK 333
           ++ RA     N K+ LQ+TF+  I  K +IKI +L  L  +LK
Sbjct: 250 SYSRANPDDYNMKLHLQETFLSTILGKQNIKIDHLGALGERLK 292


>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger) domain
          Length = 359

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 143 GLCIVTLEIEFMFDVTCKICINETIPNVKLCS*NCLYHFLDNC 15
           GLC+ T       D  C IC++      +L +  C +HF   C
Sbjct: 291 GLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTC 333


>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 762

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 185 CMYILLNRKKKHFVGLCI 132
           CMY+  N  KKH+V LC+
Sbjct: 670 CMYMPFNFDKKHWVALCV 687


>At3g13220.1 68416.m01654 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to white
           protein GB:Q27256 [Anopheles gambiae]
          Length = 685

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 79  LIHILHVTSNMNSISSVTIHRPTKCFFFLFNKIYI 183
           L+HIL   +        TIH+P+   F +F+K+ +
Sbjct: 267 LLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLL 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,118,582
Number of Sequences: 28952
Number of extensions: 255895
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)