Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a20f
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41480.1 68415.m05124 peroxidase, putative similar to peroxid...    29   2.0  
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    28   4.6  
At4g00650.1 68417.m00089 FRIGIDA protein identical to Swiss-Prot...    28   6.1  

>At2g41480.1 68415.m05124 peroxidase, putative similar to peroxidase
           [Spinacia oleracea] gi|1781334|emb|CAA71494
          Length = 328

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/64 (21%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = +2

Query: 428 DGNLIVNLMRSEDLAVTNIGVKIDEILKESNGTIDVMMP---NYKDFIFVIKRDLIDSIT 598
           DG++++    +E  A+ N+G++  E++ ++   ++ + P   +  D + +  RD +D ++
Sbjct: 77  DGSVLIKGKSAEQAALPNLGLRGLEVIDDAKARLEAVCPGVVSCADILALAARDSVD-LS 135

Query: 599 DKPT 610
           D P+
Sbjct: 136 DGPS 139


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 27/110 (24%), Positives = 48/110 (43%)
 Frame = +2

Query: 299 DERTITGDEPKSELLPEGWNDTENYRIRYVLESKLYILHGLNTDGNLIVNLMRSEDLAVT 478
           D   +  +E   E    G    E Y  RY   SK   L  +  D  L+  + +   + +T
Sbjct: 463 DPFPVDANETHFENSYSGEGIAEGYSFRYT-GSKPGSLFVITND--LLAFVWKETKVVIT 519

Query: 479 NIGVKIDEILKESNGTIDVMMPNYKDFIFVIKRDLIDSITDKPTATSETQ 628
              + + EILK+  G+    +P  K+F + ++R  I+  T   T +S ++
Sbjct: 520 LQRLNLTEILKKGLGSCVPPLPPSKNFTY-MRRSFINEFTKLSTDSSYSE 568


>At4g00650.1 68417.m00089 FRIGIDA protein identical to
           Swiss-Prot:Q9FDW0 FRIGIDA protein [Arabidopsis thaliana]
          Length = 318

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 293 LSDERTITGDEPKSELLPEGWNDTENYRIRYVLESK 400
           +S E T+T  +P  E++PE  N  E  RI  ++ SK
Sbjct: 120 VSVETTVTVSQPSQEIVPETSNKPEGERICELMCSK 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,995,997
Number of Sequences: 28952
Number of extensions: 257965
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)