Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a17f
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)           221   2e-58
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi...   221   2e-58
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc...   221   2e-58
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ...    32   0.21 
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    29   2.0  
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00...    29   2.6  
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,...    29   2.6  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    28   3.5  

>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
          Length = 152

 Score =  221 bits (540), Expect = 2e-58
 Identities = 95/135 (70%), Positives = 121/135 (89%)
 Frame = +2

Query: 56  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 416 RGMRHYWGLRVRGQH 460
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
           to ribosomal protein S18 GI:38422 from [Homo sapiens]
          Length = 152

 Score =  221 bits (540), Expect = 2e-58
 Identities = 95/135 (70%), Positives = 121/135 (89%)
 Frame = +2

Query: 56  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 416 RGMRHYWGLRVRGQH 460
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
           to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
           A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
           gb|R30430 come from this gene
          Length = 152

 Score =  221 bits (540), Expect = 2e-58
 Identities = 95/135 (70%), Positives = 121/135 (89%)
 Frame = +2

Query: 56  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 235
           MSLV  ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 236 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 415
             E++ ++TI++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S+ LD KLR+DLERLKKIR H
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120

Query: 416 RGMRHYWGLRVRGQH 460
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
           (CS13) ribosomal protein S13 precursor, chloroplast
           Arabidopsis thaliana, PIR:S59594; identical to cDNA
           ribosomal protein S13 GI:1515106
          Length = 169

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 386 LERLKKIRAHRGMRHYWGLRVRGQ 457
           ++RLK+I+ +RG+RH  GL  RGQ
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQ 145


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 253 FFNLFFCAFASTLVKINVGFFENNVGVPPANT 158
           FFNLFF A     +KI +G F  ++ +PP+++
Sbjct: 34  FFNLFFYAQVHENLKIELGIFSRSI-LPPSSS 64


>At5g49610.1 68418.m06139 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (gb|AAF30317.1)
          Length = 359

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 429 ITGAF-VCVVSTLRLLAGEEELLVYQRRSKLNK 524
           + G F +C       LA  +++LVYQRRSKL K
Sbjct: 299 VPGIFPICQTGEYVFLATHKQVLVYQRRSKLWK 331


>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
           putative similar to putative 30S ribosomal protein S13,
           chloroplast precursor GB:P42732 [Arabidopsis thaliana]
          Length = 154

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 362 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 457
           L  ++  +++RL ++  +RG RH  GL  RGQ
Sbjct: 98  LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQ 129


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 332 GKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 427
           G YS +   NLD+     L+R+KK+ A  G R
Sbjct: 26  GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,718
Number of Sequences: 28952
Number of extensions: 239711
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)