Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10f
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote...    30   1.4  
At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containi...    28   4.2  
At5g42905.1 68418.m05230 hypothetical protein                          27   7.3  
At3g32150.1 68416.m04094 hypothetical protein                          27   7.3  
At3g05650.1 68416.m00629 disease resistance family protein conta...    27   9.6  

>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 1123

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 408 VDCSGYGLT-EFPTPLD--VRTTILNLQNNKLTG 500
           +D SG GLT E P  L   ++ T LN+ NN LTG
Sbjct: 656 LDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTG 689


>At4g08560.1 68417.m01408 pumilio/Puf RNA-binding domain-containing
           protein low similarity to RNA binding protein PufA
           [Dictyostelium discoideum] GI:5106561; contains Pfam
           profile PF00806: Pumilio-family RNA binding repeat
          Length = 477

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -2

Query: 208 SELVSGGN*LSVSTGIGVSSDFIPASQ 128
           SE  SGG  +S S GI  S+DF+ ASQ
Sbjct: 106 SERKSGGRTVSGSRGISRSTDFVGASQ 132


>At5g42905.1 68418.m05230 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 441 GIQ*AHILNSLLRNCSNHPQCGTRTVLGMLN 349
           GI  +H L+ L+R C N  Q   R +LG+LN
Sbjct: 228 GISDSHPLSFLVRLCHNFLQKDWRILLGLLN 258


>At3g32150.1 68416.m04094 hypothetical protein
          Length = 241

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 132 EAGIKSDETPIPVETDNQFPPETNSE 209
           E  + S ETP PV    + PP TN+E
Sbjct: 166 EISVTSVETPEPVVIPPEVPPSTNTE 191


>At3g05650.1 68416.m00629 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4A protein
           [Lycopersicon esculentum] gi|3097197|emb|CAA73187
          Length = 868

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 417 SGYGLTEFPTPL--DVRTTILNLQNNKLTG 500
           SG G+TEFP  L    + T L++ NNK+ G
Sbjct: 398 SGCGITEFPELLRSQHKMTNLDISNNKIKG 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,430,773
Number of Sequences: 28952
Number of extensions: 207788
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)