Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G18
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02450.1 68417.m00332 glycine-rich protein similar to several...    71   6e-13
At3g03773.1 68416.m00384 expressed protein                             66   2e-11
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    29   2.4  
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom...    29   2.4  
At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family pr...    27   7.5  

>At4g02450.1 68417.m00332 glycine-rich protein similar to several
           proteins containing a tandem repeat region such as
           Plasmodium falciparum GGM tandem repeat protein
           (GB:U27807)
          Length = 241

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
 Frame = +2

Query: 68  PPVLWAQRKEDVFLTFSV-ETKDPTIKIXKDSXY-FTGEGAPDNTLHEVTIALYDTVLPE 241
           P V WA+  E +FLT  + +TKD  + +  +  + F+ +  P+N ++E+ + L D V  E
Sbjct: 5   PEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKVNVE 64

Query: 242 KSVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWNDXDDE 394
           +S  +N G    +    EK +   W  L + KK PHY+K+D++KW D DDE
Sbjct: 65  ESK-INIGER-SIFCIIEKAEPERWNKLLRVKKPPHYVKVDWDKWVDEDDE 113


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
 Frame = +2

Query: 68  PPVLWAQRKEDVFLTFSV-ETKDPTIKIXKDSXY-FTGEGAPDNTLHEVTIALYDTVLPE 241
           P VLWAQR + V+LT ++ + KD ++K      + F+  GA      E ++ LY  ++ E
Sbjct: 5   PEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERF-EFSLELYGKIMTE 63

Query: 242 KSVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPH-YLKIDFNKWNDXDDEXEXNNSYD 418
               V     +  I ++E++   +W  L K ++KP  Y+K+D+NKW D D+E     + D
Sbjct: 64  YRKNVGLRNIIFSIQKEERS---WWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSETASD 120

Query: 419 FEQMLQN 439
            E    N
Sbjct: 121 DESAFVN 127


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 368 NKWNDXDDEXEXNNSYDFEQMLQN 439
           NKW+D   E    N  DFEQ L+N
Sbjct: 689 NKWDDKKIEGLKKNKEDFEQQLEN 712


>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
           homeodomain transcription factor (AGL30) GI:3461830 from
           [Arabidopsis thaliana]; contains Pfam domain PF00319:
           SRF-type transcription factor (DNA-binding and
           dimerisation domain);  PMID: 12837945
          Length = 389

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -1

Query: 527 QVNXHHQSQFPSHQTKVFXPSAQDHQLHQSSGAFARNH-MNYFXQXHHXHH 378
           ++N   Q Q    Q +   PS  D   + + G F   H  + F   HH HH
Sbjct: 307 ELNNLQQQQQQQQQQQQQDPSMYDPMANNNGGCFQIPHDQSMFVNDHHHHH 357


>At4g00120.1 68417.m00012 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 198

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 239 EKSVFVNXGXCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWND 382
           E  ++   G C   +  K +++    P  +  + +PH+L +D+NK ND
Sbjct: 2   ENGMYKKKGVCDSCVSSKSRSNHS--PKRSMMEPQPHHLLMDWNKAND 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,538,263
Number of Sequences: 28952
Number of extensions: 211150
Number of successful extensions: 610
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)