Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F24
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 62 2e-10
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 62 2e-10
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 61 7e-10
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 60 9e-10
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 60 9e-10
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 60 9e-10
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 59 2e-09
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 59 2e-09
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 59 3e-09
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 58 5e-09
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 58 7e-09
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 54 1e-07
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 53 2e-07
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 51 6e-07
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.50
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 3.5
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 29 3.5
At5g28810.1 68418.m03542 hypothetical protein 27 8.2
At1g64430.1 68414.m07302 expressed protein 27 8.2
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T+E +K K+F ++WCPD AKV M+Y+SS D K+ L G+Q +QATD +E + ++
Sbjct: 69 TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLK 128
Query: 484 EKL 492
++
Sbjct: 129 SRV 131
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +3
Query: 78 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 254
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 255 CRYGLFDFEY--THQCQ 299
CRY ++DF++ CQ
Sbjct: 58 CRYAIYDFDFVTAENCQ 74
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T+E +K K+F ++WCPD AKV M+Y+SS D K+ L G+Q +QATD +E + ++
Sbjct: 76 TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLK 135
Query: 484 EKL 492
++
Sbjct: 136 SRV 138
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 246 TGECRYGLFDFEY--THQCQ 299
ECRY ++DF++ CQ
Sbjct: 62 ADECRYAIYDFDFVTAENCQ 81
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 60.9 bits (141), Expect = 7e-10
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 72 SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQKGGT 248
SG+ V+D KTT+ E+++ K HRYVVF I +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLP---D 69
Query: 249 GECRYGLFDFEY--THQCQ 299
+CRY ++DF++ + CQ
Sbjct: 70 NDCRYAVYDFDFVTSENCQ 88
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
TSE +K K+F +W P T+ + +LYS+S D L + L G+ IQATD +E E +
Sbjct: 83 TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLR 142
Query: 484 EK 489
E+
Sbjct: 143 ER 144
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T + +K K+F ++W PDT++V MLY+SS D K+ + G+Q +QATD SE S + ++
Sbjct: 76 TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIK 135
Query: 484 EKL 492
+L
Sbjct: 136 GRL 138
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 242
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIP-- 61
Query: 243 GTGECRYGLFDFEYTHQ--CQ 299
ECRY ++DF++T + CQ
Sbjct: 62 -DDECRYAVYDFDFTTEDNCQ 81
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 60.5 bits (140), Expect = 9e-10
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 246 TGECRYGLFDFEY--THQCQ 299
ECRY ++DF++ CQ
Sbjct: 62 ADECRYAIYDFDFVTAENCQ 81
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSE 462
T+E +K K+F ++WCPD AKV M+Y+SS D K+ L G+Q +QATD +E
Sbjct: 76 TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE 128
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/63 (42%), Positives = 42/63 (66%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T E +K K+F ++W PDT++V MLY+SS D K+ L G+Q +QATD SE S + ++
Sbjct: 76 TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 135
Query: 484 EKL 492
++
Sbjct: 136 GRV 138
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 242
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPE- 62
Query: 243 GTGECRYGLFDFEYT--HQCQ 299
ECRY ++D+++T CQ
Sbjct: 63 --DECRYAVYDYDFTTPENCQ 81
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 246 TGECRYGLFDFEY 284
ECRY +FDF++
Sbjct: 62 ADECRYAIFDFDF 74
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 245
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 246 TGECRYGLFDFEY 284
ECRY +FDF++
Sbjct: 62 ADECRYAIFDFDF 74
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
+SE + ++F ++W PDTA+V M+Y+SS D K+ L G+Q +QATD +E + +
Sbjct: 76 SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFK 135
Query: 484 EK 489
+
Sbjct: 136 SR 137
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T+E +K K+F ++W PDTAKV M+Y+SS D K+ L G+Q +QATD +E + +
Sbjct: 74 TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFK 133
Query: 484 EK 489
+
Sbjct: 134 SR 135
Score = 54.4 bits (125), Expect = 6e-08
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 248
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60
Query: 249 GECRYGLFDFEY--THQCQ 299
+CRY ++DF++ CQ
Sbjct: 61 DDCRYCIYDFDFVTAENCQ 79
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/62 (40%), Positives = 42/62 (67%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T+E +K K+F ++W PD+++V M+Y+SS D K+ L G+Q +QATD SE S + ++
Sbjct: 74 TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 133
Query: 484 EK 489
+
Sbjct: 134 SR 135
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +3
Query: 69 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 248
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLP---P 60
Query: 249 GECRYGLFDFEYT 287
ECRY ++DF++T
Sbjct: 61 NECRYAVYDFDFT 73
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T E +K K+F ++W PD+++V M+Y+SS D K+ L G+Q +QATD SE S + ++
Sbjct: 67 TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIK 126
Query: 484 EK 489
+
Sbjct: 127 SR 128
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +3
Query: 78 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 257
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 258 RYGLFDFEY 284
RY +FDF++
Sbjct: 57 RYAVFDFDF 65
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/57 (38%), Positives = 38/57 (66%)
Frame = +1
Query: 322 KQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 492
++K+ ++W P TAK+ K M+YSS+ D K+ L G+Q ATDL++ S +A+ ++
Sbjct: 76 ERKICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +3
Query: 78 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVE------TVGERNAEYEQFLEDLQK 239
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 240 GGTGECRYGLFDFEY 284
ECRY + D E+
Sbjct: 60 --ADECRYAILDIEF 72
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = +3
Query: 63 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 236
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 237 KGGTGECRYGLFDFEY 284
+CRY +FDF++
Sbjct: 66 ---VDDCRYAVFDFDF 78
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/64 (29%), Positives = 41/64 (64%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T + +K K+F ++W P+ +K+ +LY++S D L++ L G+ +QATD +E + ++
Sbjct: 80 TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQ 139
Query: 484 EKLR 495
++ +
Sbjct: 140 DRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +3
Query: 84 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECR 260
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +CR
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPE---DDCR 57
Query: 261 YGLFDFEY 284
Y +FDF+Y
Sbjct: 58 YAVFDFDY 65
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/64 (26%), Positives = 40/64 (62%)
Frame = +1
Query: 304 TSEASKKQKLFLMSWCPDTAKVXKXMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 483
T + + K+F ++W P+ +++ + M+Y++S L++ L GV +QATD +E + ++
Sbjct: 67 TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQ 126
Query: 484 EKLR 495
++ +
Sbjct: 127 DRAK 130
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 183 ETVGERNAEYEQFLEDLQKGGTGE 254
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 453 PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 587
PL + SG + SP N TRA D T PA+ D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -1
Query: 495 AELLFDGLLRRFREVGRLDVLLNSDKGL--FQ---SVERARVQHXLXNLG 361
+ L FD LRR +E+G+ D LN D +Q S++ + H L NLG
Sbjct: 224 SHLKFDASLRRLQELGK-DSFLNMDNKFETYQKRLSIDYREILHCLDNLG 272
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 566 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 474
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 579 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 490
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,075
Number of Sequences: 28952
Number of extensions: 242217
Number of successful extensions: 898
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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