Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_F23
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04845.1 68415.m00499 GCN5-related N-acetyltransferase (GNAT)... 159 2e-39
At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to... 30 1.5
At5g43200.1 68418.m05278 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At4g04635.1 68417.m00678 hypothetical protein 29 3.5
At5g01430.1 68418.m00056 Got1-like family protein contains Pfam ... 28 4.6
At3g49420.1 68416.m05402 Got1-like family protein contains Pfam ... 28 4.6
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 28 6.1
>At2g04845.1 68415.m00499 GCN5-related N-acetyltransferase (GNAT)
family protein contains Pfam profile PF00583:
acetyltransferase, GNAT family
Length = 218
Score = 159 bits (385), Expect = 2e-39
Identities = 79/180 (43%), Positives = 114/180 (63%), Gaps = 4/180 (2%)
Frame = +2
Query: 80 KLNSHTKIVGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 259
++ + + G ++LVPY HVP YH+WM+ L + T SEPL+LEQEYEMQ +W D
Sbjct: 4 RMATKVSLEGKRVVLVPYMAEHVPKYHQWMQDSALLEATGSEPLSLEQEYEMQLSWTQDP 63
Query: 260 XKCTFIILDKD-IFNNTAFDE--TGAMIGDTNIFITD-KELAIXXIXIMIAEPSARGKKX 427
K TFI+LDKD + + A + AM GD NI++ D + + + IMIAEP +RGK
Sbjct: 64 NKRTFIVLDKDFVKGDLAHGQPHVEAMTGDVNIYMNDVDDPKVAEVEIMIAEPRSRGKGL 123
Query: 428 GWEAVKLMLLYGIKYIKIQTFEAKILLQNVISIKMFKKLXFQXKSVSAVFQEVTLDXKVS 607
G E+V +M+ YG+K ++I F AKI N S+ +F+KL F+ S S +F+EVTL+ V+
Sbjct: 124 GKESVLIMMAYGVKNLEIHKFTAKIGESNTASLSLFRKLGFEESSYSGIFKEVTLEYPVT 183
>At3g53210.1 68416.m05863 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575; contains Pfam
profile PF00892: Integral membrane protein
Length = 369
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 346 ICIPNHCTCFIEGCIIKYILVQNDKCAFXFVIMPCFLHFVLLF 218
+C+ HC C+ +++ L++ F FV CF + F
Sbjct: 187 LCLMGHCLCWSSWIVLQSPLLKKYPARFSFVSYSCFFAVIQFF 229
>At5g43200.1 68418.m05278 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHY1a [Arabidopsis thaliana] GI:3790593; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 207
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 370 QLFVSYEYICIPNHCTCFIEGCIIKYILVQNDKC 269
+L S +Y +PN CF E C+ ++++ N+ C
Sbjct: 162 ELSTSDDYCELPNCTHCFHEPCLTQWLIRGNNSC 195
>At4g04635.1 68417.m00678 hypothetical protein
Length = 284
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 101 IVGANIILVPY--KKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDE 259
IVG +IILV + HH+ YH + EE ++ E E+E E ++ ++E
Sbjct: 197 IVGCDIILVSLVEEDHHIEEYHVDDEEEEEEEEGEEEEGEGEEEEEEEEEGEEEE 251
>At5g01430.1 68418.m00056 Got1-like family protein contains Pfam
profile: PF04178 Got1-like family
Length = 140
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -2
Query: 145 MMFFVRNQNYICSYDFG-----MTI*FQLLSMQXSIYNFVTLFS 29
M FF++ QNY + FG + I + +L M Y F LFS
Sbjct: 58 MQFFMKRQNYKGTISFGVGFFFVIIGWPILGMMLETYGFFVLFS 101
>At3g49420.1 68416.m05402 Got1-like family protein contains Pfam
profile: PF04178 Got1-like family
Length = 140
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = -2
Query: 145 MMFFVRNQNYICSYDFG-----MTI*FQLLSMQXSIYNFVTLFS 29
M FF++ QNY + FG + I + +L M Y F LFS
Sbjct: 58 MQFFMKRQNYKGTISFGVGFFFVIIGWPILGMMLETYGFFVLFS 101
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -3
Query: 411 ADGSAIIIXIXXIANSLSVMNIFVSPIIAPVSSKAV--LLNISLSKMINVHLXSSSCHVF 238
AD S +II + LS + +++ V ++ V LL+I + + + L S SCH F
Sbjct: 1839 ADFSKVIIDT--VKFDLSAAKAYCESLLSTVRNRLVSSLLDIHVYDLKSHGLHSFSCHDF 1896
Query: 237 CISYSCSKFNGSEA 196
C S + G A
Sbjct: 1897 CASPLTYNYAGIRA 1910
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,529
Number of Sequences: 28952
Number of extensions: 200006
Number of successful extensions: 491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -