Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_F06
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    29   2.1  
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (...    28   2.8  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    27   5.0  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 206 GIPPLEWFLTKFVTTFLPSLF 144
           GIP L  FLTK +T  LP LF
Sbjct: 344 GIPVLSMFLTKLLTVDLPRLF 364


>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
           (Ath-B) nearly identical to gi:2827143, cellulose
           synthase, catalytic subunit (Ath-B)
          Length = 1065

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 188 WFLTKFVTTFLPSLFEMRVSGVIIFTFXR 102
           WFL+ F++ F   + EMR SGV I  + R
Sbjct: 879 WFLSLFLSIFATGILEMRWSGVGIDEWWR 907


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 118 SLRXYDSRVGITAKNKKFDFANSTVGIIKT 29
           ++R Y+SRV    +NKKF  A + + ++KT
Sbjct: 262 NIRSYNSRVRGLTRNKKFTDALNLIDVMKT 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,652,671
Number of Sequences: 28952
Number of extensions: 165522
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)