Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_E21
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19490.1 68416.m02470 sodium hydrogen antiporter, putative si...    31   0.44 
At5g48370.1 68418.m05976 thioesterase family protein similar to ...    27   7.1  
At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containi...    27   7.1  
At3g14680.1 68416.m01857 cytochrome P450, putative similar to GB...    27   7.1  

>At3g19490.1 68416.m02470 sodium hydrogen antiporter, putative
           similar to NhaD [Vibrio parahaemolyticus]
           gi|3123728|dbj|BAA25994; Na+/H+ aniporter (NhaD) family
           member, PMID:11500563
          Length = 576

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   SPPHSLTGASVAAAKAHVSLSRRPPQEVKLETAS 108
           +PPH LT   V A  + +S+S R PQ V     S
Sbjct: 11  APPHQLTKRHVIATSSPISISTRLPQNVSFSKVS 44


>At5g48370.1 68418.m05976 thioesterase family protein similar to
           SP|Q9R0X4 48 kDa acyl-CoA thioester hydrolase,
           mitochondrial precursor (EC 3.1.2.-) {Mus musculus};
           contains Pfam profile PF03061: thioesterase family
           protein
          Length = 438

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 224 SEPPTAAAN-VHISRQTK*AASTSFNRTCPETATISIRFEKSTPQIHQEKKTR 379
           S+     AN + ++R +K   +   NR  PET    + FE++  + +  KK R
Sbjct: 184 SDSVALTANFIFVARDSKTGKAAPINRLSPETEVEKLLFEEAEARNNLRKKKR 236


>At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 688

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = -1

Query: 378 RVFFSWWIWGVDFSNRILIVAVSGHVRLNDVDAAHFVCREMWTF 247
           +VF    + G+  ++  L V + G +++ DV+    + +E+W +
Sbjct: 218 KVFDEMRVCGIRPNSLTLSVLIGGFLKMRDVETGRKLMKELWEY 261


>At3g14680.1 68416.m01857 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 512

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 411 IVVSKLAFQILRVFFSWWIW 352
           I VS + F +  V  SWW+W
Sbjct: 3   ISVSSVTFSLAVVVVSWWVW 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.127    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,124,004
Number of Sequences: 28952
Number of extensions: 107995
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)