Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_B19
(844 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 31 0.72
At3g11310.1 68416.m01375 hypothetical protein 29 5.1
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P... 28 6.8
At5g51340.1 68418.m06366 expressed protein 28 8.9
At3g47250.3 68416.m05132 expressed protein contains Pfam profile... 28 8.9
At3g47250.2 68416.m05131 expressed protein contains Pfam profile... 28 8.9
At3g47250.1 68416.m05130 expressed protein contains Pfam profile... 28 8.9
At3g03470.1 68416.m00345 cytochrome P450, putative similar to cy... 28 8.9
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 206 ELRAVLSIGNVLTMVLHVTSMCCGIKLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTDGF 385
+L +++ +L +LHV C GI V H V +D+ L +A+ + G
Sbjct: 502 KLPNIITSSGLLDALLHVVKRCVGI------LVSGVSHNVQLAVDVVALSLKIAVSSFGN 555
Query: 386 QCDVNYDKFSAI-PWAVVEPLLLVLNL 463
Q D SA+ P+ +++P LNL
Sbjct: 556 QTDSTEKVTSAMFPFLLIQPKTWNLNL 582
>At3g11310.1 68416.m01375 hypothetical protein
Length = 539
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 679 SHRFRISLI*CSQIGHDNPQPNQINEKI-EDVNQVYVENTGIASGLCDNRCVLNIHIVLT 503
SH + L+ + + P+P + N ++ + VE+ +GL R L H +T
Sbjct: 180 SHEIFVDLLFTESLKENRPKPARRNGYYAKETWNMMVESFNQKTGLRYTRKQLKNHWNIT 239
Query: 502 PKCPREWVEAVGS 464
R W +AVGS
Sbjct: 240 RDAWRRWCQAVGS 252
>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28170, At1g35110,
At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
At2g10350
Length = 1043
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/96 (26%), Positives = 40/96 (41%)
Frame = -1
Query: 427 PGYSAELIVINVTLEAISDNSNCQQMKRYIQDTRHQMQISDDETYSA*FDSTAHASDV*N 248
PG A L I+V + S +C +RY ++ ++ +SDDE + ++ N
Sbjct: 309 PGGDATLPPISVPKKKQS-RGHCGP-RRYSTRSKPELNLSDDEKSRLISELQTKVEELSN 366
Query: 247 HCENVSN*KNCTQFTTHTHNNSFIVDCIYKSKHTKI 140
+ K +F T +S V C SK KI
Sbjct: 367 RVMKLEKAKKTVRFKRSTKLSSSFVACSSISKRKKI 402
>At5g51340.1 68418.m06366 expressed protein
Length = 726
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +2
Query: 311 YLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPWAVV 436
Y H V C + AFH + +T+ + F+A+ + +
Sbjct: 460 YSHSVGCYSEAAFHCIEATKLTESISMQASCQAFAAVSYLTI 501
>At3g47250.3 68416.m05132 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 480
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 332 VLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 457
+LD F L+ + IV+ D+N D IPW A ++ LL+L
Sbjct: 154 ILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197
>At3g47250.2 68416.m05131 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 480
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 332 VLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 457
+LD F L+ + IV+ D+N D IPW A ++ LL+L
Sbjct: 154 ILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197
>At3g47250.1 68416.m05130 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 480
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 332 VLDIAFHLLTVAIVTDGFQCDVNYDKFSAIPW--AVVEPLLLVL 457
+LD F L+ + IV+ D+N D IPW A ++ LL+L
Sbjct: 154 ILDGCFILMLLLIVSRKIDLDMNKDPIFTIPWILASIQSDLLLL 197
>At3g03470.1 68416.m00345 cytochrome P450, putative similar to
cytochrome P450 89A2 GB:Q42602 [Arabidopsis thaliana]
Length = 511
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 513 ICMLSTHRLSQSPDAIPVFSTYTWLTSSIFS 605
I STH+L P PV WL + FS
Sbjct: 23 IFFFSTHKLPPGPPRFPVIGNIIWLKKNNFS 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,973,868
Number of Sequences: 28952
Number of extensions: 427707
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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