Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B13
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ...   179   2e-45
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z...    28   7.2  
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot...    28   9.5  

>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
           family / APC10 family contains Pfam PF03256:
           Anaphase-promoting complex, subunit 10 (APC10) domain;
           similar to anaphase promoting complex subunit APC10
           (GI:6463666) [Homo sapiens]
          Length = 192

 Score =  179 bits (436), Expect = 2e-45
 Identities = 82/154 (53%), Positives = 114/154 (74%), Gaps = 2/154 (1%)
 Frame = +1

Query: 88  CKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRIS 267
           CKPG G+  LRDD +ETYWQSDG  PHL+NIQFQKK  +  + +Y D+KLDESYTPS+IS
Sbjct: 41  CKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYVDFKLDESYTPSKIS 100

Query: 268 IRAGTHFNDLQEIEVIELIEPSGWEMIPIK--DIHDRPIRTYMIQIAVLSNHQNGRDTHM 441
           IRAG  F++L+EI+ +EL++P+GW  + +   D  +  + T+M+QIA+LSNH NGRDTH+
Sbjct: 101 IRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAILSNHLNGRDTHI 160

Query: 442 RQIKVHSPCEPTSFDINKFRNFSTVQFQQYATIR 543
           RQIKV+ P  P       F+ F++++F  Y+T+R
Sbjct: 161 RQIKVYGP-RPNPIPHQPFQ-FTSMEFLTYSTLR 192


>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 262

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 220 YTDYKLDE--SYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKD 360
           ++ Y +D+   Y P +   R  T FN+ Q+ +++E  E  GW M  ++D
Sbjct: 184 FSGYGVDQFHHYQPKK---RFRTKFNEEQKEKMMEFAEKIGWRMTKLED 229


>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
          Length = 769

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 400 AVLSNHQNGRDTHMRQIKVHSPCEP 474
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHPNQRDEVRREYLIRGPCQP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,664
Number of Sequences: 28952
Number of extensions: 307414
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)