Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0063
(791 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar... 31 0.88
At5g03830.1 68418.m00352 expressed protein hypothetical protein ... 30 2.0
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 29 2.7
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD... 29 3.5
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD... 29 3.5
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD... 29 3.5
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD... 29 3.5
At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SD... 29 4.7
At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SD... 29 4.7
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 28 8.2
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 28 8.2
>At2g44510.1 68415.m05534 p21Cip1-binding protein-related similar to
p21Cip1-binding protein TOK-1beta (GI:7339688) [Homo
sapiens]; similar to BRCA2 and Cip1/p21 interacting
protein (GI:25989375) [Homo sapiens]
Length = 326
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 539 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKA 664
++ +L +Q GL++++R++N+P + PL+ L E+ A
Sbjct: 179 LEMLLEKKAQDVGLLVSQRVMNLPPQLLPPLYDGLFDEVSWA 220
>At5g03830.1 68418.m00352 expressed protein hypothetical protein
F4I1.32, Arabidopsis thaliana, PIR:T02406
Length = 265
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/46 (23%), Positives = 28/46 (60%)
Frame = +2
Query: 539 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHREK 676
++ +L ++ GL++++R++N+P + PL+ L E+ A ++
Sbjct: 161 LELLLEKKAKDVGLLVSQRVMNLPLQLLPPLYDGLFDEVSWATEDE 206
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 136 KEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 249
++ D GSE SD SDG+ G + D + + +D D
Sbjct: 69 EQSDEGSESGSDLFSDGDEEGNNDSDDDDDDDDDDDDD 106
>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 279
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 476 TDQRIAYKTISENADPRTKELIKYILADDSQHTGLVINERILNIPAAI-SVPLFASL 643
T++ + K + + DP L++Y++ D SQ+ + N I++ A + VP+F+SL
Sbjct: 226 TERTVPLK-VQQTVDPGLTSLVRYLIHDSSQY--ISGNTYIVDSGATLPGVPIFSSL 279
>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 280
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 476 TDQRIAYKTISENADPRTKELIKYILADDSQHTGLVINERILNIPAAI-SVPLFASL 643
T++ + K + + DP L++Y++ D SQ+ + N I++ A + VP+F+SL
Sbjct: 227 TERTVPLK-VQQTVDPGLTSLVRYLIHDSSQY--ISGNTYIVDSGATLPGVPIFSSL 280
>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 276
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 482 QRIAYKTISENADPRTKELIKYILADDSQH-TGLVINERILNIPAAI-SVPLFASL 643
++I + + DP L++Y++ D SQ+ TG N I++ A + VP+F+SL
Sbjct: 224 EKIVPLKMQQTVDPGLTSLVRYLIHDSSQYVTG---NTYIVDSGATLPGVPIFSSL 276
>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 277
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 482 QRIAYKTISENADPRTKELIKYILADDSQH-TGLVINERILNIPAAI-SVPLFASL 643
++I + + DP L++Y++ D SQ+ TG N I++ A + VP+F+SL
Sbjct: 225 EKIVPLKMQQTVDPGLTSLVRYLIHDSSQYVTG---NTYIVDSGATLPGVPIFSSL 277
>At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 298
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 476 TDQRIAYKTISENADPRTKELIKYILADDSQHTGLVINERILNIPAAI-SVPLFASL 643
T++ + K + + DP L++Y++ D SQ+ + N I++ A + VP+F+SL
Sbjct: 245 TERTVPLK-VQQTIDPGLTSLVRYLIHDSSQY--ISGNTYIVDSGATLPGVPIFSSL 298
>At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 288
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 476 TDQRIAYKTISENADPRTKELIKYILADDSQHTGLVINERILNIPAAI-SVPLFASL 643
T++ + K + + DP L++Y++ D SQ+ + N I++ A + VP+F+SL
Sbjct: 235 TERTVPLK-LQQTVDPGITSLVRYLIHDSSQY--ISGNTYIVDSGATLPGVPIFSSL 288
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 139 EQDSG-SEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 249
E D G SE+D + D++ + G+ E D EG N ED D
Sbjct: 50 EDDEGESEEDDEGDTEEDDEGDSE--EDDEGENKEDED 85
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 154 SEKDSDFDSDGNYVGEKELQAD-FEGRNPEDSDFQV 258
S+ +SD +S+G + E AD + N D +FQ+
Sbjct: 668 SDNESDLESEGGFPSENMYSADSADDSNDSDDEFQI 703
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,452
Number of Sequences: 28952
Number of extensions: 254712
Number of successful extensions: 969
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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