Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0058
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    36   0.022
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    33   0.28 
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    32   0.48 
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    30   1.5  
At3g18590.1 68416.m02363 plastocyanin-like domain-containing pro...    29   4.5  
At4g31110.1 68417.m04415 wall-associated kinase, putative simila...    28   6.0  
At4g31100.1 68417.m04414 wall-associated kinase, putative              28   6.0  
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac...    28   6.0  
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    28   7.9  
At2g28150.1 68415.m03419 expressed protein                             28   7.9  
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    28   7.9  

>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +3

Query: 15  GEPDAQKMKT-VQVILCLFVASLYANGTSVSDSKLEDDLYNSI--LVADYDNAVEKSKQI 185
           G+ D  ++KT VQ I C+      A+ T++  SK  DDL   I  L+ D +  +E  +Q+
Sbjct: 708 GDDDQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQV 767

Query: 186 YEDKKSEVITNVVNKLIRNN 245
            E+  S     +      NN
Sbjct: 768 AEENSSRAWGKIETDSSSNN 787


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
 Frame = +3

Query: 33  KMKTVQVILCLFVASLYANGTSVSDSKL-EDDLYNSILVADYDNAVEKSKQIYEDKKSEV 209
           K KT Q +LC+   +++    S + +++  D++ + I+  DYD  V+ S  I  ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 210 ITNVVNKLIRNNKMNAWSTPTS 275
           +TN V+  + +  +++  TP+S
Sbjct: 458 LTNGVD--LSDVDLSSTFTPSS 477


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 22/84 (26%), Positives = 41/84 (48%)
 Frame = +3

Query: 18  EPDAQKMKTVQVILCLFVASLYANGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDK 197
           E   ++++  Q  L  +    Y     +   KLED L  SIL     N+  K ++++  K
Sbjct: 292 EEKVRQLERAQRDLDRYTHYHYRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF--K 349

Query: 198 KSEVITNVVNKLIRNNKMNAWSTP 269
           +   I + VN+L R+ ++ ++S P
Sbjct: 350 EYSWIIDAVNRLFRSRRILSYSYP 373


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 81  YANGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNAW 260
           Y     +   KLED L  SIL     N+  K ++++  K+   +T+ VN+L  + ++ + 
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410

Query: 261 STP 269
           S P
Sbjct: 411 SYP 413


>At3g18590.1 68416.m02363 plastocyanin-like domain-containing
           protein
          Length = 188

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 97  QSPTPNSKTIFTTASSLPITTMPLKKAN 180
           +SP P+S +  +++SSLP +T   KK+N
Sbjct: 134 ESPPPSSSSSSSSSSSLPASTPKAKKSN 161


>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
           to wall-associated kinase 1, Arabidopsis thaliana,
           gb:AJ009696
          Length = 756

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 126 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 224
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 430 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 462


>At4g31100.1 68417.m04414 wall-associated kinase, putative
          Length = 786

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 126 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 224
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 458 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 490


>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
           family protein contains Pfam profile PF00847: AP2 domain
          Length = 226

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 103 PTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSY 237
           P PN++  +    +  +TT+ ++K     R+RR +S  M   + Y
Sbjct: 36  PNPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 80


>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 248 DERMEYAYQLWMQGSK-DIVRECFPVEFTLIFAENNIKLMYKRDGLALT--LRDDSNNDG 418
           D+  +   +L ++G + D V   F V    +F    +   Y RD    T  + DDSNN G
Sbjct: 299 DQMPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSG 358

Query: 419 RLAY 430
           R A+
Sbjct: 359 RSAH 362


>At2g28150.1 68415.m03419 expressed protein
          Length = 540

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +3

Query: 81  YANGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNAW 260
           Y NG    D   EDDL   IL A+ +  V K  +++++  S+  + +VN   +N K    
Sbjct: 91  YRNGFVWHDLS-EDDL---ILPANGNEYVLKGSELFDESNSDHFSPIVNLATQNMKQIVV 146

Query: 261 STPTS 275
             P+S
Sbjct: 147 EPPSS 151


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 126 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 224
           +Y  +LV     AV+KSK + EDK  E I  VV
Sbjct: 465 VYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVV 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,601
Number of Sequences: 28952
Number of extensions: 300476
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)