Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0053
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    29   3.4  
At5g42710.1 68418.m05202 hypothetical protein                          28   4.5  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 552 LACGSPSVHSDVXFCPSMSALPIIAKQNSPSVGLFT 445
           + C S SV   +   P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g42710.1 68418.m05202 hypothetical protein 
          Length = 807

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 187 PDSRGSTVSISLPDSARLASALERSGIIPRMVASHHRPL-GRVHEPNVRNCGSSRTEQYY 363
           P  +G ++   L  S  LA ALE +G   R+  S    +   +HE   R+ G +R+ Q +
Sbjct: 75  PYGKGKSME-KLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVF 133

Query: 364 YRNDKPS 384
            +  +PS
Sbjct: 134 VQQQQPS 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,640
Number of Sequences: 28952
Number of extensions: 267689
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)