Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0040
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 91 7e-19
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 91 9e-19
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 30 1.7
At1g17100.1 68414.m02083 SOUL heme-binding family protein simila... 29 3.0
At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase fa... 28 5.3
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 7.0
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 27 9.3
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 27 9.3
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 27 9.3
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 9.3
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 27 9.3
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 91.1 bits (216), Expect = 7e-19
Identities = 39/57 (68%), Positives = 49/57 (85%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 426
+DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 40 KDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/72 (48%), Positives = 47/72 (65%)
Frame = +3
Query: 492 ASTKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGA 671
A +K+ ++ G N VT L+E+ KA L HDVDPIELV++LPALCRKM V +G
Sbjct: 118 AESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 177
Query: 672 NPAFGALVHRXT 707
+ GA+VH+ T
Sbjct: 178 S-RLGAVVHQKT 188
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFE+RPK F IG + P
Sbjct: 20 NPLFERRPKQFGIGGALPP 38
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 90.6 bits (215), Expect = 9e-19
Identities = 38/57 (66%), Positives = 49/57 (85%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 426
+DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 41 KDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/72 (47%), Positives = 47/72 (65%)
Frame = +3
Query: 492 ASTKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGA 671
+ +K+ ++ G N VT L+E+ KA L HDVDPIELV++LPALCRKM V +G
Sbjct: 119 SESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 178
Query: 672 NPAFGALVHRXT 707
+ GA+VH+ T
Sbjct: 179 S-RLGAVVHQKT 189
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFE+RPK F IG + P
Sbjct: 21 NPLFERRPKQFGIGGALPP 39
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILH 659
++ G V K + + + L ++ PI+++ LP LC + GV ++
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVY 98
>At1g17100.1 68414.m02083 SOUL heme-binding family protein similar
to SOUL protein [Mus musculus] GI:4886906; contains Pfam
profile PF04832: SOUL heme-binding protein
Length = 232
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 342 GHFQTTLKYSLLTLDADILGPSYKSGQVTIG*MP 241
G F+ + SLL+ +D+LGP +SG IG P
Sbjct: 6 GFFKLSFLLSLLSGGSDLLGPDAESGVAQIGKFP 39
>At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase
family protein / LACT family protein similar to
SP|P40345 Phospholipid:diacylglycerol acyltransferase
(EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae};
contains Pfam profile PF02450: Lecithin:cholesterol
acyltransferase (phosphatidylcholine-sterol
acyltransferase)
Length = 671
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 534 CLCRIGWCWPLWWRLIFLGNLSFSSFPQ 451
C IG WW L+FL N +SFPQ
Sbjct: 54 CCWFIGCVCVTWWFLLFLYNAMPASFPQ 81
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 453 QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 364
QP P CF L P L LE + +CS++ +
Sbjct: 992 QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
++ G N TK + + + D +P+E++L LP L V
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNV 78
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
++ G N TK + + + D +P+E++L LP L V
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNV 78
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
++ G N TK + + + D +P+E++L LP L V
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNV 78
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 483 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 388
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 556 RRRRTCGHRFMMLILLSWFSSCQ 624
RR R CGH F +L + SW + Q
Sbjct: 94 RRLRNCGHVFHLLCIDSWLTQKQ 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,747
Number of Sequences: 28952
Number of extensions: 275632
Number of successful extensions: 789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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