Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0038
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18820.1 68417.m02778 expressed protein                             32   0.44 
At3g14870.1 68416.m01880 expressed protein contains Pfam profile...    29   4.1  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    28   5.5  
At4g28260.1 68417.m04048 expressed protein                             27   9.5  
At3g11330.1 68416.m01378 leucine-rich repeat family protein            27   9.5  
At1g21310.1 68414.m02662 proline-rich extensin-like family prote...    27   9.5  

>At4g18820.1 68417.m02778 expressed protein
          Length = 1111

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 535  PKSDILFGKPTNSQDALVNETKEVTAASGIQRRQXRKTGSKHTQAVXKMCLPRASRQFNT 714
            P+S  L G   N   +  +E  EVT ++G +R+Q ++   + T+ V    L RA R+   
Sbjct: 947  PQSLALIGHDYNIDGSGRSEIVEVTESNGQRRQQQKQQEEERTEPVGSSALARARRKHLE 1006

Query: 715  GSE 723
             S+
Sbjct: 1007 ASQ 1009


>At3g14870.1 68416.m01880 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 445

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 627 LNARGSGHFLRFVHKRVLTIRGFTK 553
           L+A  S HF+ ++H  V +IRGF K
Sbjct: 192 LSAVSSTHFVTYLHHTVKSIRGFVK 216


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 434 FTLPVWMKTK--PTKEFEPFAGSPPPPKIHSSTYATLNRIYYLVNPRIVK 577
           +T PV+  T   P  +  P   SPPPP +   TY    + Y    P I+K
Sbjct: 140 YTPPVYKPTPSPPVYKKSPSYSSPPPPYVPKPTYTPTTKPYV---PEILK 186


>At4g28260.1 68417.m04048 expressed protein 
          Length = 516

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 499 RRSGERFKFFCWFCLHP 449
           R  G+RF FFC  CL P
Sbjct: 39  REDGKRFVFFCTLCLAP 55


>At3g11330.1 68416.m01378 leucine-rich repeat family protein
          Length = 499

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 440 LPVWMKTKPTKEFEPFAGSPPPPKIHSSTYATLNRIYYLVNPRIV 574
           LP +    P+    PF    PPP   SS+   + ++ +L  P ++
Sbjct: 20  LPSFTAKSPSSSVPPFDIEQPPPSSSSSSIEIVTQMPHLTQPDVL 64


>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 431

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 407 SSDPEIKDGFTLPVWMKTKPTKEFEPFAGSPPPPKIHSS 523
           S  P +K     PV+    P KE   +   PPPP  H S
Sbjct: 376 SPPPPVKHYSPPPVYHSPPPPKEKYVYKSPPPPPVHHYS 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,483
Number of Sequences: 28952
Number of extensions: 264854
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)