Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0021
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   2.4  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.2  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    28   4.2  
At4g27730.1 68417.m03985 oligopeptide transporter OPT family pro...    28   5.6  
At3g62370.1 68416.m07006 expressed protein                             28   5.6  
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ...    27   7.4  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   7.4  
At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase...    27   7.4  
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein...    27   9.8  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   9.8  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 181 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 71
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 413 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 297
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 333 PPRHHSARLERNTVRPPILSTAHRFRQPSK**NNESSGFSATIARND 193
           PPRHH   +  ++  PP +++A R   PS       SG+S+ I R +
Sbjct: 303 PPRHHGPVVGPSSALPPAITSAER---PSGGDEARPSGWSSGIPRRN 346


>At4g27730.1 68417.m03985 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 736

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 272 PRTASANRVSNETMKVVVFQRRS---RETISHLCYTSHVSLQCQTRVKLNRVFF 120
           PR+    +V+   + VVV+   +    E I HLC TS +    Q    ++RVFF
Sbjct: 523 PRSMFMAQVAGTLVAVVVYTGTAWWLMEEIPHLCDTSLLPSDSQWTCPMDRVFF 576


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 398 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 303
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
           putative transcriptional coactivator ALY, Mus musculus,
           EMBL:MMU89876
          Length = 288

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
 Frame = +2

Query: 245 LLGWRKRCAVDNIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSK 424
           L G  KR  V   GG    R +     RG       +LP    +G    G   G     +
Sbjct: 189 LNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGGMRGGRGGFRARGR 248

Query: 425 NNAGVLRPAQRGQKPRVEQKGKSWLDPDF-STHRDCENTA 541
            N G  R   RG   +  +K  + LD D  S H D  NT+
Sbjct: 249 GNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAMNTS 288


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 193 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 86
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase,
           putative similar to mitogen-activated protein kinase
           MEKK1 GP|1255448 [Arabidopsis thaliana]
          Length = 608

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 437 VLRPAQRGQKPRVEQKGKSWLDPDFSTHRDCENTAYRSFSIKS 565
           VL+P    ++P ++ +G SW   DF TH     T  R  S  S
Sbjct: 228 VLKPPPAMKRPPIDHRGSSW---DFLTHFAPSETVKRPSSSSS 267


>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
           salt-tolerance protein - Arabidopsis thaliana,
           PID:e224078
          Length = 242

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 503 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 390
           D+A+ C    R V    +LA  HLR+SLT  P   ++P
Sbjct: 20  DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 313  TLGTKHRAPADIIDRAPLP 257
            T+G+ HR+ AD ++ +PLP
Sbjct: 972  TIGSDHRSNADSVEHSPLP 990


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,976
Number of Sequences: 28952
Number of extensions: 304336
Number of successful extensions: 888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)