Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20107
(526 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 140 7e-34
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 140 7e-34
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 140 7e-34
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 140 7e-34
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 98 3e-21
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 87 5e-18
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 60 1e-09
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 59 2e-09
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 34 0.067
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 33 0.089
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 33 0.089
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 33 0.089
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 31 0.36
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 31 0.36
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 31 0.47
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 30 0.83
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 30 0.83
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 30 0.83
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 29 1.9
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 2.5
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 28 3.3
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 28 3.3
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 28 3.3
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 28 3.3
At1g01060.2 68414.m00007 myb family transcription factor contain... 28 3.3
At1g01060.1 68414.m00006 myb family transcription factor contain... 28 3.3
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 27 7.7
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 27 7.7
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 27 7.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 140 bits (338), Expect = 7e-34
Identities = 65/85 (76%), Positives = 73/85 (85%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
YY T+IDAPGHRDFIKNMITGTSQADCAVLI + TG FEAGISK+GQTREHALLAFTLG
Sbjct: 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144
Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEE 256
VKQ+I NKMD+T P Y + R++E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDE 169
Score = 95.1 bits (226), Expect = 3e-20
Identities = 50/86 (58%), Positives = 57/86 (66%)
Frame = +1
Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
I KEVSSY KK+GYNP FVPISG+ GDNM+E ST + W+K G L+
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLL 217
Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
EALD I P RP+DKPLRLPLQDV K
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYK 243
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (338), Expect = 7e-34
Identities = 65/85 (76%), Positives = 73/85 (85%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
YY T+IDAPGHRDFIKNMITGTSQADCAVLI + TG FEAGISK+GQTREHALLAFTLG
Sbjct: 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144
Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEE 256
VKQ+I NKMD+T P Y + R++E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDE 169
Score = 95.1 bits (226), Expect = 3e-20
Identities = 50/86 (58%), Positives = 57/86 (66%)
Frame = +1
Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
I KEVSSY KK+GYNP FVPISG+ GDNM+E ST + W+K G L+
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLL 217
Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
EALD I P RP+DKPLRLPLQDV K
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYK 243
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (338), Expect = 7e-34
Identities = 65/85 (76%), Positives = 73/85 (85%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
YY T+IDAPGHRDFIKNMITGTSQADCAVLI + TG FEAGISK+GQTREHALLAFTLG
Sbjct: 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144
Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEE 256
VKQ+I NKMD+T P Y + R++E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDE 169
Score = 95.1 bits (226), Expect = 3e-20
Identities = 50/86 (58%), Positives = 57/86 (66%)
Frame = +1
Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
I KEVSSY KK+GYNP FVPISG+ GDNM+E ST + W+K G L+
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLL 217
Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
EALD I P RP+DKPLRLPLQDV K
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYK 243
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (338), Expect = 7e-34
Identities = 65/85 (76%), Positives = 73/85 (85%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
YY T+IDAPGHRDFIKNMITGTSQADCAVLI + TG FEAGISK+GQTREHALLAFTLG
Sbjct: 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG 144
Query: 182 VKQLIVGVNKMDSTEPPYXEPRFEE 256
VKQ+I NKMD+T P Y + R++E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDE 169
Score = 95.1 bits (226), Expect = 3e-20
Identities = 50/86 (58%), Positives = 57/86 (66%)
Frame = +1
Query: 256 IKKEVSSYXKKIGYNPAAXXFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKXLI 435
I KEVSSY KK+GYNP FVPISG+ GDNM+E ST + W+K G L+
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------GPTLL 217
Query: 436 EALDAILPPARPTDKPLRLPLQDVSK 513
EALD I P RP+DKPLRLPLQDV K
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYK 243
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 98.3 bits (234), Expect = 3e-21
Identities = 46/86 (53%), Positives = 59/86 (68%)
Frame = +2
Query: 11 TIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVKQ 190
TI+DAPGH+ ++ NMI+G SQAD VL+ A GEFE G + GQTREH LA TLGV +
Sbjct: 182 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSK 241
Query: 191 LIVGVNKMDSTEPPYXEPRFEESRRK 268
LIV VNKMD + + R++E +K
Sbjct: 242 LIVVVNKMDDPTVNWSKERYDEIEQK 267
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 87.4 bits (207), Expect = 5e-18
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISK-NGQTREHALLAFTL 178
++V ++D+PGH+DF+ NMI G +QAD A+L+ A G FEAG GQTREHA +
Sbjct: 317 HHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHARVLRGF 376
Query: 179 GVKQLIVGVNKMDSTEPPYXEPRFE 253
GV+Q+IV +NKMD Y + RF+
Sbjct: 377 GVEQVIVAINKMDIV--GYSKERFD 399
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/70 (41%), Positives = 41/70 (58%)
Frame = +2
Query: 17 IDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 196
+D PGH D++KNMITG +Q D A+L+ G QT+EH LLA +GV ++
Sbjct: 147 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPDMV 199
Query: 197 VGVNKMDSTE 226
V +NK D +
Sbjct: 200 VFLNKEDQVD 209
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +2
Query: 17 IDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 196
+D PGH D++KNMITG +Q D +L+ G QT+EH LLA +GV L+
Sbjct: 135 VDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLV 187
Query: 197 VGVNKMDSTEPP 232
+NK+D + P
Sbjct: 188 CFLNKVDVVDDP 199
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 430 LIEALDAILP-PARPTDKPLRLPLQDV 507
L++A+D +P P R DKP +P++DV
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDV 275
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 5 YVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGV 184
+V+ +D PGH + M+ G + D A+LI A QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 185 KQLIVGVNKMD 217
K +I+ NK+D
Sbjct: 174 KDIIIIQNKID 184
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 33.5 bits (73), Expect = 0.089
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 5 YVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGV 184
+V+ +D PGH + M+ G + D A+L+ A QT EH + +
Sbjct: 128 HVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRL 181
Query: 185 KQLIVGVNKMD 217
K +I+ NK+D
Sbjct: 182 KHIIILQNKID 192
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 33.5 bits (73), Expect = 0.089
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 5 YVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGV 184
+V+ +D PGH + M+ G + D A+L+ A QT EH + +
Sbjct: 128 HVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRL 181
Query: 185 KQLIVGVNKMD 217
K +I+ NK+D
Sbjct: 182 KHIIILQNKID 192
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 33.5 bits (73), Expect = 0.089
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 5 YVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGV 184
+V+ +D PGH + M+ G + D A+L+ A QT EH + +
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSEHLAAVEIMQL 175
Query: 185 KQLIVGVNKMD 217
K +I+ NK+D
Sbjct: 176 KHIIILQNKID 186
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
Y I+D PGH +F M AD AVLI A G
Sbjct: 209 YLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
Y I+D PGH +F M AD AVLI A G
Sbjct: 209 YLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
Y + +ID+PGH DF + T +D A+++ A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 403 KEGKADGKXLIEALDAILPPARPTDKP 483
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 30.3 bits (65), Expect = 0.83
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREH 157
Y V IID PGH DF + D A+L+ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 30.3 bits (65), Expect = 0.83
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREH 157
Y V IID PGH DF + D A+L+ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLG 181
Y + +ID PGH DF + S A+L+ A G QT + LAF
Sbjct: 135 YLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG-------VQAQTVANFYLAFEAN 187
Query: 182 VKQLIVGVNKMD 217
+ ++ +NK+D
Sbjct: 188 L-TIVPVINKID 198
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 8 VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTG 112
+T +D PGH F + G + D VL+ A G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 14 IIDAPGHRDFIKNMITGTSQADCAVLI 94
+ID PGH F G+S D A+L+
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILV 139
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 14 IIDAPGHRDFIKNMITGTSQADCAVLI 94
+ID PGH F G+S D A+L+
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILV 798
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 14 IIDAPGHRDFIKNMITGTSQADCAVLI 94
+ID PGH F G+S D A+L+
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILV 731
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +2
Query: 8 VTIIDAPGHRDFIKNMITGTSQADCAVLIXXAGTGEFEAGISKNGQTREHALLAFTLGVK 187
+ +ID PGH F G++ D A+L+ + G+ QT E L VK
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV-----DIMRGLEP--QTIESLNLLRRRNVK 610
Query: 188 QLIVGVNKMD 217
I+ +NK+D
Sbjct: 611 -FIIALNKVD 619
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 403 KEGKADGKXLIEALDAILPPARPTDKP 483
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 403 KEGKADGKXLIEALDAILPPARPTDKP 483
KE + G + +ALD +PP RP KP
Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 2 YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 94
Y + +ID+PGH DF + D A+++
Sbjct: 98 YLINLIDSPGHVDFSSEVTAALRITDGALVV 128
>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 326 FLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTEXASLKLSMPSCHLPAPLTSPCVFP 496
FL+G+ T+ C+ S D K+ +L + A PS LP P C+ P
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILP 73
>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
protein low similarity to 67kD chloroplastic RNA-binding
protein, P67 [Arabidopsis thaliana] GI:9755842; contains
Pfam profile PF01535: PPR repeat
Length = 860
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 326 FLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTEXASLKLSMPSCHLPAPLTSPCVFP 496
FL+G+ T+ C+ S D K+ +L + A PS LP P C+ P
Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILP 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,892,382
Number of Sequences: 28952
Number of extensions: 233146
Number of successful extensions: 669
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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