Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20098
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    31   0.53 
At5g65710.1 68418.m08270 leucine-rich repeat transmembrane prote...    29   2.8  
At5g37310.1 68418.m04481 endomembrane protein 70, putative multi...    28   5.0  
At5g07680.2 68418.m00880 no apical meristem (NAM) family protein...    28   5.0  
At5g07680.1 68418.m00879 no apical meristem (NAM) family protein...    28   5.0  
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo...    28   5.0  
At1g22230.1 68414.m02779 expressed protein ; expression supporte...    28   5.0  

>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 17/62 (27%), Positives = 35/62 (56%)
 Frame = +2

Query: 41  NDLVVPEKILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQ 220
           N+  + EK+ E TQ+L S + K L  +E R +AE      ++++  +    ++EL ++ +
Sbjct: 445 NEEEIKEKVNERTQLLKSELDKKL--EECRRMAEEFVEMERRRMEERIVQQQEELEMMRR 502

Query: 221 KL 226
           +L
Sbjct: 503 RL 504


>At5g65710.1 68418.m08270 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 993

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 224 TSDRPRGAPSHHRISGYGVSSERRSGLLRPDLCF-LALATVSGYCCTVSGSLLES 63
           T   PR       IS + VS+ R SG L P LC+   L  +  +   +SG + ES
Sbjct: 352 TGTLPRNLGKFSEISEFDVSTNRFSGELPPYLCYRRKLQKIITFSNQLSGEIPES 406


>At5g37310.1 68418.m04481 endomembrane protein 70, putative
           multispanning membrane protein, Homo sapiens,
           EMBL:HSU94831
          Length = 564

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 150 WIASARSLLSCVGNSFWILLYSIWVTSRIFSGTTRS 43
           W+ASA    SC G S  +L +S++VT    S  +++
Sbjct: 529 WLASATDSSSCSGQSDSVLPFSLFVTFTAQSSASKT 564


>At5g07680.2 68418.m00880 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 315

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
 Frame = +2

Query: 407 PDILALLRAYRPRSIN-------PLDEVPSKLRAVVXNGQHSSRSTVATSPSQETGAT 559
           PD L ++  Y+P+S+N        L +  S L+A++ N +  +  T+  S SQETG +
Sbjct: 224 PDFLQMIPLYQPQSLNISESSNPVLTQEQSVLQAMMENNRRQNFKTL--SISQETGVS 279


>At5g07680.1 68418.m00879 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 329

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
 Frame = +2

Query: 407 PDILALLRAYRPRSIN-------PLDEVPSKLRAVVXNGQHSSRSTVATSPSQETGAT 559
           PD L ++  Y+P+S+N        L +  S L+A++ N +  +  T+  S SQETG +
Sbjct: 238 PDFLQMIPLYQPQSLNISESSNPVLTQEQSVLQAMMENNRRQNFKTL--SISQETGVS 293


>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 449

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 383 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 484
           ++L +GDF   L LL+ Y P +I+ +  V  KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447


>At1g22230.1 68414.m02779 expressed protein ; expression supported
           by MPSS
          Length = 314

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 402 SPEYNCLKKLHVASPARDGADFN*AWSSEEVRKVGRRVDNAKF 274
           SP+  C  ++ V S  RDG   N      E+ K+ R    +KF
Sbjct: 79  SPKVTCAGQIKVRSSKRDGGGKNWQSLMAEIEKIHRSKSESKF 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,343
Number of Sequences: 28952
Number of extensions: 214664
Number of successful extensions: 785
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)