Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20087
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51410.1 68416.m05631 expressed protein contains Pfam profile...    29   1.6  
At2g29800.1 68415.m03620 kelch repeat-containing F-box family pr...    29   1.6  
At3g16880.1 68416.m02158 F-box protein-related contains weak hit...    29   2.8  
At1g23020.1 68414.m02876 ferric-chelate reductase, putative simi...    28   3.7  
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ...    27   6.4  

>At3g51410.1 68416.m05631 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 255

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 366 ISPMSIQKRFHHPSA*FQP--SQLQMYWHRR*SARPH-SLLTLPALLDSI 226
           +  +S+  R HHPSA FQ   SQ+ ++ +   S   H SLL L  L  S+
Sbjct: 12  VRSISLPSRIHHPSAKFQAALSQIHLFQNSSDSQSLHASLLNLSELYHSL 61


>At2g29800.1 68415.m03620 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 414

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 395 YNFXYYRSVS*AR---CRYRSDFIIHLRNFNRPSCRCTGTVVDPLGRIHYLRCR 243
           YNF Y +++S      CR+ +    HLRN  R  C     V+D  GRI+ +  R
Sbjct: 170 YNFRYNKTISTVLEIDCRFNT--CRHLRNMKRDRCSAVAGVID--GRIYVVAGR 219


>At3g16880.1 68416.m02158 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 365

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 308 PSCRCTGTVVDPLG--RIHYLRCRHCLTRSY 222
           PS +C G +++P+G  R+++     C+T+S+
Sbjct: 82  PSIKCNGKIINPIGMCRVYHCGGLVCITKSF 112


>At1g23020.1 68414.m02876 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 693

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 166 IRYVYXDLAFRRVWADIIYFSIFLFYFNTLYSQLQFYTNFIYIIDRF*REL 14
           IR  + ++ F   +  +++   F+F+    Y+ + F   +I+++DRF R L
Sbjct: 271 IRRRFFEVFFYTHYLYMVFMLFFVFHVGISYALISFPGFYIFMVDRFLRFL 321


>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
           YT521-B-like family protein low similarity to cleavage
           and polyadenylation specificity factor 30 kDa subunit
           [Bos taurus] GI:2327052; contains Pfam profiles PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar),
           PF04146: YT521-B-like family; supporting cDNA
           gi|24415581|gb|AY140901.1|
          Length = 678

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 480 VAPHPXHQSDLKFGSAQSRSFXQEVCR 400
           VAP   H S    G+ + RSF Q VCR
Sbjct: 41  VAPTYDHSSATVAGAGRGRSFRQTVCR 67


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,813,440
Number of Sequences: 28952
Number of extensions: 214062
Number of successful extensions: 503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)