Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20086X
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27300.1 68417.m03917 S-locus protein kinase, putative simila...    29   0.59 
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    27   4.1  
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    27   4.1  
At4g31805.1 68417.m04519 WRKY family transcription factor identi...    26   5.5  
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD...    26   5.5  
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,...    26   5.5  
At2g38440.1 68415.m04721 expressed protein                             26   7.2  
At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to hi...    26   7.2  
At2g30590.1 68415.m03727 WRKY family transcription factor              25   9.5  

>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 815

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 105 SMCGIWATFGVTGGLTPTCVKCFSNIRHRGPDAWRIEQDA 224
           S+CG +A  G+    TP+C  C    + +    W I + A
Sbjct: 296 SICGAYAVCGINSKNTPSC-SCLQGFKPKSGRKWNISRGA 334


>At5g35210.2 68418.m04175 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1409

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 205 HASGPRWRMFEKHFTQV 155
           HASGP+W +F K   ++
Sbjct: 291 HASGPQWNIFNKFVVEI 307


>At5g35210.1 68418.m04174 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1576

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 205 HASGPRWRMFEKHFTQV 155
           HASGP+W +F K   ++
Sbjct: 291 HASGPQWNIFNKFVVEI 307


>At4g31805.1 68417.m04519 WRKY family transcription factor identical
           to WRKY DNA-binding protein 18 (WRKY18) GI:13506730 from
           [Arabidopsis thaliana]
          Length = 344

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 268 PDSETCNPRIANGSLASCSIRHASGPR 188
           PDS TC+ R    S  +CSI   S  R
Sbjct: 318 PDSSTCSERSVPRSYEACSIHRTSFSR 344


>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
           similar to cellulose synthase catalytic subunit
           gi:2827143 from [Arabidopsis thaliana], cellulose
           synthase-7 (gi:9622886) from Zea mays; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1145

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 292 RLHTVPTVPDSETCNPRIANGSLASCSI 209
           R H +  V D+ET +P++A    +SC++
Sbjct: 105 RAHLMEKVIDTETSHPQMAGAKGSSCAV 132


>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase SP:P45582 from
           [Asparagus officinalis]
          Length = 815

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 4   KXRCSIAVWNLTFG 45
           K RCS+ VW+ TFG
Sbjct: 784 KSRCSVPVWSKTFG 797


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 135 VTGGLTPTCVKCFSNIRHRG 194
           + G  +PTC KC  +I H G
Sbjct: 800 LAGDASPTCSKCDDHISHEG 819


>At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to
           histidine kinase AHK3 [Arabidopsis thaliana]
           gi|13537198|dbj|BAB40775
          Length = 1036

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 169 HFTQVGVRPPVTPNVAQIPHMLSL 98
           HF ++G+R  V P V Q  H L +
Sbjct: 763 HFQRLGIRVEVVPRVEQALHYLKI 786


>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 232 GSLASCSIRHASGPRWRMFEKHFTQVGVRPPVTPNVAQIP 113
           GSL S S+ HA   R +  + H +Q  +  P      ++P
Sbjct: 52  GSLLSSSVGHARFRRAKKLQSHVSQSLLLDPCQQRTTEVP 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,114,101
Number of Sequences: 28952
Number of extensions: 131023
Number of successful extensions: 342
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)