Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20077
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 63 1e-10
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 63 1e-10
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 63 1e-10
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 60 6e-10
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 60 6e-10
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 60 8e-10
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 40 7e-04
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 5.5
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 5.5
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 57.2 bits (132), Expect = 6e-09
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 57.2 bits (132), Expect = 6e-09
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 55 KEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 57.2 bits (132), Expect = 6e-09
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYV 136
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 60.5 bits (140), Expect = 6e-10
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 58 KEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 57.6 bits (133), Expect = 4e-09
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYV 139
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 124 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ*SRNTASRN 279
VPESVLK + + +++ ++ IFKRAEQ ++ A ++
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 64
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 60.5 bits (140), Expect = 6e-10
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 KEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 57.6 bits (133), Expect = 4e-09
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
+ +K+LQL RLRQI NGVF+++NKATVNMLR EPY+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYV 134
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 124 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ*SRNTASRN 279
VPESVLK + + +++ ++ IFKRAEQ ++ A ++
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 59
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 60.1 bits (139), Expect = 8e-10
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 258 KEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 KEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +2
Query: 392 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 502
+ +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYV 134
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 124 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQ*SRNTASR 276
VPESVLK Q + + ++ IFKRAEQ S+ A +
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEK 58
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 255 VKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 419
V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N L
Sbjct: 56 VHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 347 IGICHPNPWYQPSFTEVRKVL 409
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 424 QSKQLQNFTDF-GETWLIPRIRMTNANLASPGT 329
+ KQL+ + G TW+ P I +N ++ SPGT
Sbjct: 126 ERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,488,450
Number of Sequences: 28952
Number of extensions: 175934
Number of successful extensions: 424
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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