Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20034
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12290.1 68416.m01534 tetrahydrofolate dehydrogenase/cyclohyd...    77   7e-15
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd...    76   2e-14
At4g00600.1 68417.m00084 tetrahydrofolate dehydrogenase/cyclohyd...    73   1e-13
At2g38660.1 68415.m04748 tetrahydrofolate dehydrogenase/cyclohyd...    69   2e-12
At5g46570.1 68418.m05734 protein kinase family protein contains ...    31   0.47 
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    28   4.3  
At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocot...    27   7.6  
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote...    27   7.6  

>At3g12290.1 68416.m01534 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
           (C1-THF synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
           contains Pfam profiles PF02882: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
           PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           catalytic domain
          Length = 299

 Score = 77.0 bits (181), Expect = 7e-15
 Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
 Frame = +2

Query: 257 LLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXV-GD 433
           L++K+  LN +P VHGI+VQ+P    H  + H +  A+S DKDVDG + +N G++ + G 
Sbjct: 85  LISKVHELNSNPDVHGILVQLPLPK-HINEEH-ILGAISIDKDVDGFHPLNIGKLAMKGR 142

Query: 434 LSGXIPCTPAGCVELIXKTGVTIAGK 511
               +PCTP GC+EL+ ++GV I G+
Sbjct: 143 EPLFLPCTPKGCLELLARSGVKIKGQ 168


>At4g00620.1 68417.m00086 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
           (C1-THF synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
           contains Pfam profiles PF02882: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
           PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           catalytic domain
          Length = 360

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +2

Query: 254 KLLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXV-G 430
           ++L  ++  N+ PSVHGI+VQ+P  S    D   + +AVS +KDVDG + +N GR+ + G
Sbjct: 144 EVLKSVSGFNDDPSVHGILVQLPLPSH--MDEQNILNAVSIEKDVDGFHPLNIGRLAMRG 201

Query: 431 DLSGXIPCTPAGCVELIXKTGVTIAGK 511
                +PCTP GC+EL+ +  + I GK
Sbjct: 202 REPLFVPCTPKGCIELLHRYNIEIKGK 228



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 28/75 (37%), Positives = 44/75 (58%)
 Frame = +3

Query: 27  AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEKI 206
           A +I G  VA  I +++  +V+R++    G  P LA++ VG R DS  Y+R K KA + +
Sbjct: 69  AIVIDGKAVAKKIRDEITIEVSRMKES-IGVIPGLAVILVGDRKDSATYVRNKKKACDSV 127

Query: 207 GIAAEHIRLPRDITE 251
           GI +  +RL  D +E
Sbjct: 128 GIKSFEVRLAEDSSE 142


>At4g00600.1 68417.m00084 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
           precursor (C1-THF synthase) [Includes:
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
           Formyltetrahydrofolate synthetase (EC 6.3.4.3)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           NAD(P)-binding domain, PF00763: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, catalytic domain
          Length = 310

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
 Frame = +2

Query: 254 KLLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXV-G 430
           ++L  ++  N+ PSVHG++VQ+P  S    D   + +AVS +KDVDG + +N GR+ + G
Sbjct: 94  EVLKYVSGFNDDPSVHGVLVQLPLPSH--MDEQNILNAVSIEKDVDGFHPLNIGRLAMRG 151

Query: 431 DLSGXIPCTPAGCVELIXKTGVTIAGK 511
                +PCTP GC+EL+ +  +   GK
Sbjct: 152 REPLFVPCTPKGCIELLHRYNIEFKGK 178


>At2g38660.1 68415.m04748 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
           precursor (C1-THF synthase) [Includes:
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
           Formyltetrahydrofolate synthetase (EC 6.3.4.3)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           NAD(P)-binding domain, PF00763: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, catalytic domain
          Length = 352

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +2

Query: 254 KLLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXV-G 430
           ++++ +   NE  S+HGI+VQ+P    H  ++ ++ + V  +KDVDG + +N G + + G
Sbjct: 138 QIISVLRKFNEDTSIHGILVQLPLPQ-HLNES-KILNMVRLEKDVDGFHPLNVGNLAMRG 195

Query: 431 DLSGXIPCTPAGCVELIXKTGVTIAGK 511
                + CTP GCVEL+ +TGV IAGK
Sbjct: 196 REPLFVSCTPKGCVELLIRTGVEIAGK 222



 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 28/73 (38%), Positives = 41/73 (56%)
 Frame = +3

Query: 33  IISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEKIGI 212
           +I G  +A  I   +  +V +++ K  G  P LA+V VG + DS  Y+R K+KA E+ GI
Sbjct: 65  VIDGNVIAEEIRTKIISEVGKMK-KAVGKVPGLAVVLVGEQRDSQTYVRNKIKACEETGI 123

Query: 213 AAEHIRLPRDITE 251
            +    LP D TE
Sbjct: 124 KSVLAELPEDCTE 136


>At5g46570.1 68418.m05734 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 489

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 36  ISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEKIGI 212
           ++G +V   I+N    ++  LR   +GF P   IV  GG    NV  R KL+    + I
Sbjct: 26  VNGDQVDQEIQNFKEFELNELRKATNGFSPS-CIVSEGGEKAPNVVYRGKLEGNHLVAI 83


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 45  IEVAGSIENDLRQQVTRLRSKWSGFEPRLA 134
           +EVAG  E+DL Q++  ++ +  G E  LA
Sbjct: 190 LEVAGETESDLNQKLEDVKKERDGLEAELA 219


>At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocotyl
           protein 1 (NPH1) / phototropin identical to SP|O48963
           Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)
           (Phototropin) {Arabidopsis thaliana}, cDNA
           nonphototropic hypocotyl 1 (NPH1) GI:2832240; contains
           Pfam profiles PF00069:Protein kinase domain and
           PF00785:PAC motif
          Length = 996

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -1

Query: 429 PTXTRPSLIVFKPSTSLSGETASVTR*ASXAW 334
           P  TR SL VF PST L+     V R    AW
Sbjct: 17  PRDTRGSLEVFNPSTQLTRPDNPVFRPEPPAW 48


>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 1095

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 380 KDVDGLNTINEGRVXVGDLSGXIPCTPAGCVELI 481
           KD+  L+ ++  ++ V +L G IP + A C +L+
Sbjct: 313 KDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLV 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,089
Number of Sequences: 28952
Number of extensions: 161039
Number of successful extensions: 338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)