Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20029
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08540.1 68417.m01405 expressed protein                             29   3.8  
At5g10220.1 68418.m01185 annexin 6 (ANN6) nearly identical to ca...    27   8.7  
At4g25310.1 68417.m03640 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   8.7  
At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At4g08540.1 68417.m01405 expressed protein
          Length = 473

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
 Frame = +3

Query: 315 TRPLANCAYCENVTKPIVLYNVTRHEFNKYAYSTGPIIVKNAIKSWRATKEFNYKMFKRL 494
           T+  +NCA C+N  +P +      H   +Y            +KS +  ++     F  L
Sbjct: 2   TKRSSNCAICDNTNRPCICTACVNHRLIEY---------NTLLKSLKTRRDSLLSRFNEL 52

Query: 495 YEETGVA--MRAWMTDVNS*ILKL 560
            E  G A   + W    N  I KL
Sbjct: 53  LESKGKADDQKNWRLIQNEKISKL 76


>At5g10220.1 68418.m01185 annexin 6 (ANN6) nearly identical to
           calcium-binding protein annexin 6 [Arabidopsis thaliana]
           GI:12667518
          Length = 318

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 265 KLFRQTISTAIKIVLIIQKSAFC*TSQIYHCDYSRKLNQTVSFQNYSN 122
           KLF + I   ++I        F  T Q YH  Y   L + V++    N
Sbjct: 97  KLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGN 144


>At4g25310.1 68417.m03640 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Petunia x
           hybrida][GI:311658], [Solanum tuberosum][GI:1039356];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 353

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 500 RDWGSYESLDDGCQFLNFKTDLFSLKEVFNMPEERVK 610
           ++WG ++ ++ G     FK+D   +++ FN+P E  K
Sbjct: 78  KEWGFFQLVNHGMDLDKFKSD---IQDFFNLPMEEKK 111


>At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 657

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 240 VDIVCLNNFMSARCLVPSNYL--IWEATRPLANCAYCENV-TKPIVLYN 377
           V +  LNNFM   CL+  N +   W+  + + +  Y ENV T  +V+Y+
Sbjct: 181 VSVHALNNFMG--CLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYS 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,412,351
Number of Sequences: 28952
Number of extensions: 226587
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)